GBrowse Details

Vigan.01G281400.01

Basic Information:
Name: Vigan.01G281400.01
Multiple alignment
Variant Information
Position: Chr01:40120073..40123849 (- strand)
Length: 3777
Functional Information:
Description: Similar to Uncharacterized protein. [I1KLT6, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.44,0.29,4.43,11.80,7.36,1.73,29.76,3.86
Automatic updates:
Name: KT031111 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_47 bHLH transcription factor (Glyma07g32690.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:40120073..40120316 (- strand)
Length: 244
Type: three_prime_UTR
Position: Chr01:40120317..40120802 (- strand)
Length: 486
Type: CDS
Position: Chr01:40122793..40123113 (- strand)
Length: 321
Type: CDS
Position: Chr01:40123114..40123849 (- strand)
Length: 736
Type: five_prime_UTR


>Vigan.01G281400.01
GTTGGTTTCC ACTACTCTGA ATGAATAATT CAGTAGTAAC AGTGTCAGCA GAGGAGGGTG GCTATAACAC ATTGACCAAA
TAATGAACAT AAATATAAAA TATTTAGTCA ACATTACGCA CCACATGGAT GTTTTGGTTC AAACTAGGCA TATATGAGTA
AGCTCAAAAC TCAAGATCAT TGTTCAGTGG TGATCCTCTT CTGAATTCTT TCTGCACTTT CAAGACATCA AGCATAGCAT
AACCTTTGTT TCTTGTCAGT ACTCAAACTC ACTGAAATCC AAGTCAGAGT CAAGTCTCAC TTCCCAAAGT TCTTCACCCT
TTTGGCCTTT TCTCATTTGG AAATGGTTGA GCTCAACACC ACCAAGATGA AAACGTGGAT GTTTTCACAC TGATCTTCCA
CCCCTTTAAC CCTTTCAACC CTTTTCCCTT GCCTAATGGA AGTTATGTCC AACACCATCA CCAAACAGAC CACAGTAACA
CCTTCTCAAG GCACCATCCA CTTCCAAAAG CTTTCTTTCT GGTTTGCTCC TCGAACTCGT CCACCCGGTT AACTTCTTTC
TTCTCTTTCT CCTGTGCCTC CACTCCCCTA AAAAGGGTTT TAACAAAAAC GGCTCATGAT CACAGTTTTG GTCCAAAAAT
CAAGCTTTTT AGAGTTTCCC TGATCGTAAT TTTCCTAACC ACTGCAATTC TATCTGCATA GACTGTGTTT GTCTGCAATT
TAAAACCTTT AATATTATGG TTCACTCCTT CTATGAGAAA AGCTCTCCTT CTGGCTCTGA TATTTCGGGG TTGTTCAATC
CCACTTTGCA AAGTGTTGGA GCTTCCAATG GTGAAGTTGC GAAGGGTGGC TTGTCATCGT CACATTCTTT GGTTTATGAG
AGTGAGAAGG GAGAGCTGGT GAAGTGCTCT TCAGCTGCAA AGGTAGGGAA GAATGAGATT TGTGAGGCCA AAGCTTTGGC
TGCTTTGAAG AATCACAGTG AAGCAGAGAG AAGAAGGAGG GAGAGAATAA ACGGTCATCT TGCAACACTA CGTGGCCTTG
TACCATCCAC TGAAAAGATG GATAAAGCCA CTTTACTGGC TGAAGTGATA AAGCAAGTGA AGGAATTGAA GAAAACTGCA
GTAGAAGTAA GCAAGGGTTT TCCAATCCCA ATGGATGCAG ATGAAGTGAA AGTTGAACCA TGTGATGGAT CCATGTCTTA
CAGTGCAACT ATTTGCTGTG ATTTTCGACC TGAAATAATA TCTGACCTAA GACAAACCCT TGATTCTCTT CCACTGCATC
TAGAGAAGGC AGAAATTTCA ACTTTGGCAG GAAGAATGAA GAATGTATTC GTCTTCACAT GTTGCAAAGG GAACATTGAT
ATTCATACTG AAGCATGCCA AGCTCTTGCA AGAACTGTTC ATCAGGCACT GTGTTCTGTA CTGGAAAAGG CTTCTGCCTC
ACTTGAGTTC TCACCCAGAA CATCACATGC TAACAAGAGG AGAAGACTAT GCTTTATTGA AACATCCACT TCCTCATGCA
ACCATGGATC TTGTTCGTGT TGATGTCTAC AATTTCATGT GTTATGTTCT TTATTTCATG TGTTACAAAG TGTGGCATTA
GTAGCATCAC ACTTCACTGT ATGTTGTCAA ACATATTTTA TATTACTGGG TCAATCTCAT TAAGTGATAA ATGAGATTCA
TTAAATAAGA TGTGTTATAC CATCATGAAA ATCGCGTTTA TCCAATAATA GAAATTGTGT TATAGAGTTT ATAAGAAAAT
GTATTATTAA TATCTATCTG TTGTTCA

>Vigan.01G281400.01
ATGGTTCACT CCTTCTATGA GAAAAGCTCT CCTTCTGGCT CTGATATTTC GGGGTTGTTC AATCCCACTT TGCAAAGTGT
TGGAGCTTCC AATGGTGAAG TTGCGAAGGG TGGCTTGTCA TCGTCACATT CTTTGGTTTA TGAGAGTGAG AAGGGAGAGC
TGGTGAAGTG CTCTTCAGCT GCAAAGGTAG GGAAGAATGA GATTTGTGAG GCCAAAGCTT TGGCTGCTTT GAAGAATCAC
AGTGAAGCAG AGAGAAGAAG GAGGGAGAGA ATAAACGGTC ATCTTGCAAC ACTACGTGGC CTTGTACCAT CCACTGAAAA
GATGGATAAA GCCACTTTAC TGGCTGAAGT GATAAAGCAA GTGAAGGAAT TGAAGAAAAC TGCAGTAGAA GTAAGCAAGG
GTTTTCCAAT CCCAATGGAT GCAGATGAAG TGAAAGTTGA ACCATGTGAT GGATCCATGT CTTACAGTGC AACTATTTGC
TGTGATTTTC GACCTGAAAT AATATCTGAC CTAAGACAAA CCCTTGATTC TCTTCCACTG CATCTAGAGA AGGCAGAAAT
TTCAACTTTG GCAGGAAGAA TGAAGAATGT ATTCGTCTTC ACATGTTGCA AAGGGAACAT TGATATTCAT ACTGAAGCAT
GCCAAGCTCT TGCAAGAACT GTTCATCAGG CACTGTGTTC TGTACTGGAA AAGGCTTCTG CCTCACTTGA GTTCTCACCC
AGAACATCAC ATGCTAACAA GAGGAGAAGA CTATGCTTTA TTGAAACATC CACTTCCTCA TGCAACCATG GATCTTGTTC
GTGTTGA

>Vigan.01G281400.01
MVHSFYEKSS PSGSDISGLF NPTLQSVGAS NGEVAKGGLS SSHSLVYESE KGELVKCSSA AKVGKNEICE AKALAALKNH
SEAERRRRER INGHLATLRG LVPSTEKMDK ATLLAEVIKQ VKELKKTAVE VSKGFPIPMD ADEVKVEPCD GSMSYSATIC
CDFRPEIISD LRQTLDSLPL HLEKAEISTL AGRMKNVFVF TCCKGNIDIH TEACQALART VHQALCSVLE KASASLEFSP
RTSHANKRRR LCFIETSTSS CNHGSCSC*