GBrowse Details

Vigan.01G282800.01

Basic Information:
Name: Vigan.01G282800.01
Multiple alignment
Variant Information
Position: Chr01:40296979..40306327 (- strand)
Length: 9349
Functional Information:
Description: Similar to Cysteine synthase. [A5YT88, Glycine max]
GO: Biological Process: cysteine biosynthetic process from serine (GO:0006535)
Molecular Function: cysteine synthase activity (GO:0004124)
InterPro: Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site (IPR001216)
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily (IPR001926)
Cysteine synthase K/M (IPR005856)
Cysteine synthase A (IPR005859)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.99,13.18,53.56,160.42,51.89,30.83,42.14,36.58
Arabidopsis thaliana homolog: AT2G43750.1, AT3G59760.1
Automatic updates:
Name: NM_001248202 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max OAS-TL4 cysteine synthase (OAS-TL4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40296979..40297254 (- strand)
Length: 276
Type: three_prime_UTR
Position: Chr01:40297255..40297347 (- strand)
Length: 93
Type: CDS
Position: Chr01:40298090..40298170 (- strand)
Length: 81
Type: CDS
Position: Chr01:40298488..40298547 (- strand)
Length: 60
Type: CDS
Position: Chr01:40301009..40301088 (- strand)
Length: 80
Type: CDS
Position: Chr01:40301188..40301239 (- strand)
Length: 52
Type: CDS
Position: Chr01:40301462..40301599 (- strand)
Length: 138
Type: CDS
Position: Chr01:40302980..40303243 (- strand)
Length: 264
Type: CDS
Position: Chr01:40304331..40304388 (- strand)
Length: 58
Type: CDS
Position: Chr01:40305168..40305277 (- strand)
Length: 110
Type: CDS
Position: Chr01:40305822..40306049 (- strand)
Length: 228
Type: CDS
Position: Chr01:40306050..40306327 (- strand)
Length: 278
Type: five_prime_UTR


>Vigan.01G282800.01
TCGGAGAATA TTTTTCTACG TTAAATGTCT GATTTATTAA ATTTGCAAAC TTATCATTGG CCCTTCTGCC AAGCCGACAG
ACCCTGCAAT TGCCACCCCA TCTTCCAATG CACATTCGTG GGAGCAACTA CAAAAGGATA CTGTGAAGTG AGTTCGAGCG
ATTCTGCAGT AACTTGCCAT TTTCGTTCGG CAAATCAGTT TCGACTGCGC TCATCAAACG TCGTCGTTCT CCACTTCCTA
ACCTTCTTTT CGTTGTGACA TTCCCCCAAT CAACAACAAT GGCTTCTGCT TCCTTCGTCA ACTCGTTCAC CTGTTCTTCG
CGTGCTCCCA CTCTCCACCC TTTCACCACC GTCTCCACCG CCACGTCACT CAGGCCCGGC AACGGCCGCT CTTCGAGACC
ACTCGTCACG AGGATCTCGT CGCCTTCCCC CGTTGTCTGC AAAGCTGTCT CCGTTAAGCC CCAAACTGAA ATTGAGGGTC
TCAACATTGC TGAAGACGTT ACGCAGCTCA TAGGGAAAAC GCCAATGGTT TACCTCAACA ATATTGTGAA GGGTTCTGTG
GCCAATATTG CTGCAAAGCT TGAGATTATG GAGCCGTGTT GTAGTGTCAA AGACAGGATT GGTTTTAGCA TGATAAATGA
TGCTGAGCAG AGAGGAGCTA TAACACCTGG GAAGAGTATA TTGGTGGAAC CTACCAGTGG GAACACTGGA ATTGGTCTCG
CCTTTATAGC AGCTTCAAGA GGATATAAAC TGATTTTGAC AATGCCTGCT TCAATGAGTT TAGAAAGACG AGTTCTTTTG
AAAGCATTTG GTGCTGAGCT TGTTTTGACT GATGCAGCAA AGGGCATGAA TGGTGCAGTT CAAAAGGCTG AAGAAATTTT
GAAAAATACC CCTGACGCAT ACATGCTTCA ACAATTTGAT AATCCTTCAA ATCCTAAGGT TCATTTTGAG ACAACTGGTC
CCGAGATATG GGAAGATACA AGGGGAAAGA TAGATATTTT AGTTGCAGGA ATTGGAACTG GCGGAACTGT TTCTGGAGTT
GGTCGATTCT TAAAACAACA AAACCCAAAA ATACAGGTTA TTGGTGTAGA GCCTCTGGAA AGCAACATAC TTTCAGGGGG
AAAGCCAGGA CCTCACAAAA TTCAGGGTAT CGGAGCTGGT TTTGTGCCCG GGAATTTGGA TCAAGATGTG CTTGATGAAG
TTATAGCGAT ATCAAGTGAT GAATCAGTTG AAACTGCAAA ACAATTAGCA CTCCAGGAAG GCTTGCTGGT GGGAATTTCT
TCTGGAGCTG CTGCCGCAGC TGCTTTGAAG GTTGGAAAGA GGCCTGAAAA TGCAGGAAAA CTTATTGGGG TTGTCTTCCC
TAGCTTTGGT GAAAGATATT TGTCTACTCT TCTTTTCCAG TCAATTCGGG AAGAATGTGA GAAAATGCAA CCTGAGCCAT
GAATCGACTT TGCCTGTTAA TGTTTCTTTC ACATTTGCCT CGAGTATCTG TATTACATGC CATACTATGT CCATGTTTCT
CATTTTTTAC CTTAAGAAAT TATATAAATC TATATAGGTC ATTGATTTCA CTTACAGCAC ATATTAATGA CCCTTGATTG
AATAAGAGTT TATTCTCTTC TCTCTTTGGG ATAAAACTTT CAGATGTAGG AATTACTTGT TTTGCCCTTT TTTCATGTAT
GACAGCTTCG CTTATATAAA ATAATTGGGG AAATTGTT

>Vigan.01G282800.01
ATGGCTTCTG CTTCCTTCGT CAACTCGTTC ACCTGTTCTT CGCGTGCTCC CACTCTCCAC CCTTTCACCA CCGTCTCCAC
CGCCACGTCA CTCAGGCCCG GCAACGGCCG CTCTTCGAGA CCACTCGTCA CGAGGATCTC GTCGCCTTCC CCCGTTGTCT
GCAAAGCTGT CTCCGTTAAG CCCCAAACTG AAATTGAGGG TCTCAACATT GCTGAAGACG TTACGCAGCT CATAGGGAAA
ACGCCAATGG TTTACCTCAA CAATATTGTG AAGGGTTCTG TGGCCAATAT TGCTGCAAAG CTTGAGATTA TGGAGCCGTG
TTGTAGTGTC AAAGACAGGA TTGGTTTTAG CATGATAAAT GATGCTGAGC AGAGAGGAGC TATAACACCT GGGAAGAGTA
TATTGGTGGA ACCTACCAGT GGGAACACTG GAATTGGTCT CGCCTTTATA GCAGCTTCAA GAGGATATAA ACTGATTTTG
ACAATGCCTG CTTCAATGAG TTTAGAAAGA CGAGTTCTTT TGAAAGCATT TGGTGCTGAG CTTGTTTTGA CTGATGCAGC
AAAGGGCATG AATGGTGCAG TTCAAAAGGC TGAAGAAATT TTGAAAAATA CCCCTGACGC ATACATGCTT CAACAATTTG
ATAATCCTTC AAATCCTAAG GTTCATTTTG AGACAACTGG TCCCGAGATA TGGGAAGATA CAAGGGGAAA GATAGATATT
TTAGTTGCAG GAATTGGAAC TGGCGGAACT GTTTCTGGAG TTGGTCGATT CTTAAAACAA CAAAACCCAA AAATACAGGT
TATTGGTGTA GAGCCTCTGG AAAGCAACAT ACTTTCAGGG GGAAAGCCAG GACCTCACAA AATTCAGGGT ATCGGAGCTG
GTTTTGTGCC CGGGAATTTG GATCAAGATG TGCTTGATGA AGTTATAGCG ATATCAAGTG ATGAATCAGT TGAAACTGCA
AAACAATTAG CACTCCAGGA AGGCTTGCTG GTGGGAATTT CTTCTGGAGC TGCTGCCGCA GCTGCTTTGA AGGTTGGAAA
GAGGCCTGAA AATGCAGGAA AACTTATTGG GGTTGTCTTC CCTAGCTTTG GTGAAAGATA TTTGTCTACT CTTCTTTTCC
AGTCAATTCG GGAAGAATGT GAGAAAATGC AACCTGAGCC ATGA

>Vigan.01G282800.01
MASASFVNSF TCSSRAPTLH PFTTVSTATS LRPGNGRSSR PLVTRISSPS PVVCKAVSVK PQTEIEGLNI AEDVTQLIGK
TPMVYLNNIV KGSVANIAAK LEIMEPCCSV KDRIGFSMIN DAEQRGAITP GKSILVEPTS GNTGIGLAFI AASRGYKLIL
TMPASMSLER RVLLKAFGAE LVLTDAAKGM NGAVQKAEEI LKNTPDAYML QQFDNPSNPK VHFETTGPEI WEDTRGKIDI
LVAGIGTGGT VSGVGRFLKQ QNPKIQVIGV EPLESNILSG GKPGPHKIQG IGAGFVPGNL DQDVLDEVIA ISSDESVETA
KQLALQEGLL VGISSGAAAA AALKVGKRPE NAGKLIGVVF PSFGERYLST LLFQSIREEC EKMQPEP*