GBrowse Details

Vigan.01G283600.01

Basic Information:
Name: Vigan.01G283600.01
Multiple alignment
Variant Information
Position: Chr01:40383643..40390438 (- strand)
Length: 6796
Functional Information:
Description: Similar to Nucleic acid binding protein, putative. [B9SFT0, Ricinus communis]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:25.69,24.72,13.83,15.46,15.93,7.76,12.43,11.51
Arabidopsis thaliana homolog: AT3G59800.1
Automatic updates:
Name: NM_001249478 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500071 (LOC100500071), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255431 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100817273 (LOC100817273), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40383643..40383909 (- strand)
Length: 267
Type: three_prime_UTR
Position: Chr01:40383910..40384125 (- strand)
Length: 216
Type: CDS
Position: Chr01:40385381..40385427 (- strand)
Length: 47
Type: CDS
Position: Chr01:40385510..40385651 (- strand)
Length: 142
Type: CDS
Position: Chr01:40388880..40388981 (- strand)
Length: 102
Type: CDS
Position: Chr01:40390038..40390124 (- strand)
Length: 87
Type: CDS
Position: Chr01:40390125..40390438 (- strand)
Length: 314
Type: five_prime_UTR


>Vigan.01G283600.01
GTAGAAGGAA GAAAAAACCA TTTCCCATGT CTAAAAATCT ACGTGTATAT CCAGCCCCTA TAAAACGATA CCCATCGGGT
CTTACATCAA GTTAAGGCCC ATCATGTAAT TGCTGCATCT GAATGAGAAG GAGAACGATA AAAGAGGAAA CAACCAAACA
TCTAAAGAAA CGAAAGAAGG TATCGAAGGA GGTTTGAGAT TTGGAAATTG AATCCCTAAT TTGGAGAAAC CTGGTCCAAC
TCCTGTGGAG GAGTGGTGTT TCAATCTGCA TGATCTCATA GTGAATTGTG TTGTGTTCAA TCCGCAGAGT AACAATGGGG
AAAAACCAAG CCTACAAAGC TATGCAGAGA GCCAGGTTGG GCGGTGCCTC CGCCGGCCCC GACGAGATTG AAGACGGCAT
GGTGGATGGT TCATTTCATT CACCAGAATG GCATGCAGCA CGTTTGGCTA GCCTTAACAC CTCTCACACC ATTACCTGGG
AAGAGTACAA AAAGAAGCAA AAGGAAGAGG AAATAAAAAA AGGGGAATTG GAAGCAGATG CAGATAGGAT GATGAGAGAG
TACAGAGCTC AACTAGATGC TGAAAGGGCT CGTAAGCTTT CCCAAGGAAG AAATCACTCT AGTAGCAAGT CTAGACATTC
TAAAGATAAG AGGGACAAAA TTTCCAAGAA GCACAGCAGC AAAAAGAGAA AGCATTCAAG AAGATCTTCT GCATCTAGCT
CCTCTTCATC ATCTTCATAC TCTTCCAGCA GTGATGAAGA AGAAAGAGGA TCAAGGAGGT CCAAGTCCAG GTCTAAGAGG
TCAAAGAAGG AAAAGAAGCC CAAGTCAAGA AGCAAGGATA CTGGAACGGA TAGTGAAGAT AATGGTCCAG TTCGTCTTTC
AAGATTCTTT GGGAATGTTA AGAGTTAATA GTGTCTAAAT ACTTGGTCAT GTATCATAAA ATTATTTTAT GCAAATTGTA
CACTGTGGGC AGCTTCACTC TTATGTTCAA CTTATTCTTT CTTAACAGAT TTGTAATCTT GTATGCCATT TTGTCTTCTA
TCAATGTGTG AGATGGAGGG GATCTTTGAG TTTCGATGAC TATAAATTGA ATTATAGCGT GATGTTTAAC GGACCTCACT
GGTTTAACCA TATAAAACTA TTAGTGGACT CAATGGAAAG GGAGGGAATA CAGCA

>Vigan.01G283600.01
ATGGGGAAAA ACCAAGCCTA CAAAGCTATG CAGAGAGCCA GGTTGGGCGG TGCCTCCGCC GGCCCCGACG AGATTGAAGA
CGGCATGGTG GATGGTTCAT TTCATTCACC AGAATGGCAT GCAGCACGTT TGGCTAGCCT TAACACCTCT CACACCATTA
CCTGGGAAGA GTACAAAAAG AAGCAAAAGG AAGAGGAAAT AAAAAAAGGG GAATTGGAAG CAGATGCAGA TAGGATGATG
AGAGAGTACA GAGCTCAACT AGATGCTGAA AGGGCTCGTA AGCTTTCCCA AGGAAGAAAT CACTCTAGTA GCAAGTCTAG
ACATTCTAAA GATAAGAGGG ACAAAATTTC CAAGAAGCAC AGCAGCAAAA AGAGAAAGCA TTCAAGAAGA TCTTCTGCAT
CTAGCTCCTC TTCATCATCT TCATACTCTT CCAGCAGTGA TGAAGAAGAA AGAGGATCAA GGAGGTCCAA GTCCAGGTCT
AAGAGGTCAA AGAAGGAAAA GAAGCCCAAG TCAAGAAGCA AGGATACTGG AACGGATAGT GAAGATAATG GTCCAGTTCG
TCTTTCAAGA TTCTTTGGGA ATGTTAAGAG TTAA

>Vigan.01G283600.01
MGKNQAYKAM QRARLGGASA GPDEIEDGMV DGSFHSPEWH AARLASLNTS HTITWEEYKK KQKEEEIKKG ELEADADRMM
REYRAQLDAE RARKLSQGRN HSSSKSRHSK DKRDKISKKH SSKKRKHSRR SSASSSSSSS SYSSSSDEEE RGSRRSKSRS
KRSKKEKKPK SRSKDTGTDS EDNGPVRLSR FFGNVKS*