GBrowse Details

Vigan.01G283700.01

Basic Information:
Name: Vigan.01G283700.01
Multiple alignment
Variant Information
Position: Chr01:40400131..40404709 (- strand)
Length: 4579
Functional Information:
Description: Similar to Acyl-[acyl-carrier-protein] desaturase. [V7CH04, Phaseolus vulgaris]
GO: Biological Process: fatty acid metabolic process (GO:0006631)
Biological Process: fatty acid biosynthetic process (GO:0006633)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: acyl-[acyl-carrier-protein] desaturase activity (GO:0045300)
InterPro: Fatty acid desaturase, type 2 (IPR005067)
Stearoyl-ACP desaturase, conserved site (IPR005803)
Ferritin-like superfamily (IPR009078)
Ribonucleotide reductase-related (IPR012348)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.74,14.41,27.99,57.24,34.89,48.78,23.80,31.44
Arabidopsis thaliana homolog: AT2G43710.2, AT3G02610.1, AT3G02620.1, AT3G02630.1, AT5G16230.1, AT5G16240.1
Automatic updates:
Name: KX881934 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isolate WT stearoyl-acyl carrier protein desaturase (SACPD) mRNA, SACPD-A allele, complete cds; chloroplast.
PubMed ID: -
Status: Known Variant
Name: KX881935 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max isolate D227G(F1396) stearoyl-acyl carrier protein desaturase (SACPD) mRNA, SACPD-A allele, complete cds; chloroplast.
PubMed ID: -
Status: Known Variant
Name: NM_001251324 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stearoyl-acyl carrier protein desaturase (ACPD), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: NM_001251615 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max stearoyl-ACP desaturase 2 (SAD2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40400131..40401273 (- strand)
Length: 1143
Type: three_prime_UTR
Position: Chr01:40401274..40401834 (- strand)
Length: 561
Type: CDS
Position: Chr01:40402448..40402952 (- strand)
Length: 505
Type: CDS
Position: Chr01:40404412..40404521 (- strand)
Length: 110
Type: CDS
Position: Chr01:40404522..40404709 (- strand)
Length: 188
Type: five_prime_UTR


>Vigan.01G283700.01
GCCTAAACCA TCCATTAAGT GGTTCCCTTC TTTCCCTTTC ACTCGCTGCT CTCCTCCTTT GCTGCCTCAC ATCACTCTTC
TTCTTGGCTT GCTTTCTTTC ATTCTTTCTT CTCATACAAT TTCTAATTCG TTTGTCGAAA TCTCTTTCAC TCTCATCGTC
TTCCAATCAG GAAACATAAG AACCAAGAAT GGCTCTCAGA CTGAATCCTC TGCCAACCCA AACCTTCGCC CTTCCTCAGA
TGGCTAGTCT CAGATCTCCC AAGTTCCGCA TGGCTTCCAC CCTCCGCTCT GGTTCCAAAG AGGTTGAAAA TATTAAGAAG
CCTTTCACGC CTCCGAGAGA AGTGCATGTT CAAGTGACCC ATTCTATGCC TCCCCAGAAG ATTGAGATTT TCAAATCGTT
GGAGGATTGG GCTGAGCAGA ACGTCTTGAC TCTCCTTAAA CCTGTAGAAA AATGTTGGCA ACCACAGGAT TTTTTACCAG
ATCCTTCTGC AGATGGATTT GACGAGCAGG TGAGAGAACT GAGAGAGAGA GCAAAGGAGC TTCCTGATGA TTACTTTGTT
GTTCTGGTTG GAGACATGAT CACGGAGGAA GCCCTTCCTA CTTATCAAAC AATGTTAAAT ACATTGGATG GAGTTCGTGA
TGAAACAGGC GCTAGCCTTA CTTCCTGGGC AGTTTGGACT AGGGCATGGA CTGCTGAAGA AAATAGACAC GGTGATCTTC
TTAATAAGTA TCTTTACTTA TGTGGACGAG TTGACATGAG ACAAATTGAG AAGACAATTC AGTACTTGAT TGGATCTGGA
ATGGATCCTC GGACTGAGAA CAGTCCCTAC CTTGGTTTCA TTTACACTTC ATTTCAAGAG AGGGCAACCT TCATATCCCA
CGGAAACACA GCCAGGCTTG CTAAGGAGCA TGGTGATATA AAGTTGGCCC AGATCTGCGG CATGATTGCC TCGGATGAGA
AACGCCATGA GACTGCATAC ACAAAGATAG TGGAAAAGCT GTTTGAGGTT GACCCTGATG GAACTGTTAT GGCGTTTGCA
GACATGATGA GGAAGAAAAT TGCCATGCCA GCACATCTTA TGTATGATGG CCTTGACGAC AACCTGTTTG ATAACTACTC
TGCTGTAGCC CAACGCATTG GGGTCTATAC TGCCAAGGAC TATGCTGATA TACTTGAATT TCTGGTGGGG AGGTGGAAGG
TGGAGGATCT AACAGGACTA TCAAGCGAGG GAAGGAAGGC TCAGGATTAC GTTTGTGGGC TGCCACCAAG AATCAGAAGG
TTGGAGGAGA GAGCTCAAGC AAGAGTCAAG GAGTCATCAA AAATTCGGTT CAGTTGGATT CATGACAGGG AAGTACTACT
CTAAATGCAC CAAGGAAGCA TCGTGAATGT TCCTGGAAAA CCATTCTGAG AAATGTTGAA TAGTTGAAGA TTCAGTATGT
CATTTTTTTT TTCTCTTTTT GCCTTTTTTT TGGTCTGTTA TATGTCACTG TAAGGTGAAA CAGTTGTTCT TGCATGGTTC
GCAAGTCACG CAATTAGGGG CAACTGTAGT ATTAGAAATG CTATTTTTTG TTTCCCTTTT CTTTGTGGTA GTGATGTCTG
TTGAAGCATA AGCAAAACGT TTTTCTATGG CAATTTTGAT GATAAAGAAA TTTAGTTCTT CCGTGGTTGG ATATATTTCT
ACATAGTAGA AGTTAGTTTG ATGATGGTGT AGCGACCGAG TCTTGCTTAT TTGCCATTTT GCAATAGGAT AACTTAGATA
TGCTCCCTTT ATTATTGTTG GCCAACTGAA ATATGCTCAC TAACCAGATT AATTGTCACT ACGGTTACCA GGCAATCTTC
TTGCGTGTGA TTCTGTCAAA TGATTACATG TAATTTTGGT GGGATAATAT GGTTTGTTAC TATATTCATG TATTCATATT
TGCATACGCT ATGTTAATGT GAGAAGCACG CAAACAAAAA TTCTGCCTTT TATATTTTAA CTTGTGTGTT TTAGGTTAAT
GTTTTTTATA TGCTTAAAAA TATTAGAAAG ATGTTTTGTT GAGGATTTAA ATTTTTCCAT TTTAAGTTCT TTAAAGTATA
TTTTCAAACT TTTATCACTC CGAAACGTCT TTCTCTGTGA ATTAATTAAC CCCTCTTTTC CTTTTCCACT TAAGGATCTT
GAAAAGTGAA GCAGGTCAGA GTTTGCTGGC TATGGGGAAA CACTTCTACC ATTTTCGAAC TATTGGGTTT GTCAGGACAA
CGCGTCCATG TGATCCTTGC CTACCCTCTT CTTCTCGAAT TGAGATCTCT TTATACCTCA ACTTCTATGC TGTTGGTTTA
CAACCAGCTC GTGTTCTTTT TCTTCGTTAT GTTGTATATA ACCATTAAAC AGATTTCATA TGACTCGTTG CTCTTGGATC
AACCTTCTTC ATAACCATCA TATCAATCCA CGTCAACAAT CCATTACCGT GATGGTATTT ATTGTATTTC TTGACTTGCT
ACGAATTCAA TGTATGTTAT TTTTAGT

>Vigan.01G283700.01
ATGGCTCTCA GACTGAATCC TCTGCCAACC CAAACCTTCG CCCTTCCTCA GATGGCTAGT CTCAGATCTC CCAAGTTCCG
CATGGCTTCC ACCCTCCGCT CTGGTTCCAA AGAGGTTGAA AATATTAAGA AGCCTTTCAC GCCTCCGAGA GAAGTGCATG
TTCAAGTGAC CCATTCTATG CCTCCCCAGA AGATTGAGAT TTTCAAATCG TTGGAGGATT GGGCTGAGCA GAACGTCTTG
ACTCTCCTTA AACCTGTAGA AAAATGTTGG CAACCACAGG ATTTTTTACC AGATCCTTCT GCAGATGGAT TTGACGAGCA
GGTGAGAGAA CTGAGAGAGA GAGCAAAGGA GCTTCCTGAT GATTACTTTG TTGTTCTGGT TGGAGACATG ATCACGGAGG
AAGCCCTTCC TACTTATCAA ACAATGTTAA ATACATTGGA TGGAGTTCGT GATGAAACAG GCGCTAGCCT TACTTCCTGG
GCAGTTTGGA CTAGGGCATG GACTGCTGAA GAAAATAGAC ACGGTGATCT TCTTAATAAG TATCTTTACT TATGTGGACG
AGTTGACATG AGACAAATTG AGAAGACAAT TCAGTACTTG ATTGGATCTG GAATGGATCC TCGGACTGAG AACAGTCCCT
ACCTTGGTTT CATTTACACT TCATTTCAAG AGAGGGCAAC CTTCATATCC CACGGAAACA CAGCCAGGCT TGCTAAGGAG
CATGGTGATA TAAAGTTGGC CCAGATCTGC GGCATGATTG CCTCGGATGA GAAACGCCAT GAGACTGCAT ACACAAAGAT
AGTGGAAAAG CTGTTTGAGG TTGACCCTGA TGGAACTGTT ATGGCGTTTG CAGACATGAT GAGGAAGAAA ATTGCCATGC
CAGCACATCT TATGTATGAT GGCCTTGACG ACAACCTGTT TGATAACTAC TCTGCTGTAG CCCAACGCAT TGGGGTCTAT
ACTGCCAAGG ACTATGCTGA TATACTTGAA TTTCTGGTGG GGAGGTGGAA GGTGGAGGAT CTAACAGGAC TATCAAGCGA
GGGAAGGAAG GCTCAGGATT ACGTTTGTGG GCTGCCACCA AGAATCAGAA GGTTGGAGGA GAGAGCTCAA GCAAGAGTCA
AGGAGTCATC AAAAATTCGG TTCAGTTGGA TTCATGACAG GGAAGTACTA CTCTAA

>Vigan.01G283700.01
MALRLNPLPT QTFALPQMAS LRSPKFRMAS TLRSGSKEVE NIKKPFTPPR EVHVQVTHSM PPQKIEIFKS LEDWAEQNVL
TLLKPVEKCW QPQDFLPDPS ADGFDEQVRE LRERAKELPD DYFVVLVGDM ITEEALPTYQ TMLNTLDGVR DETGASLTSW
AVWTRAWTAE ENRHGDLLNK YLYLCGRVDM RQIEKTIQYL IGSGMDPRTE NSPYLGFIYT SFQERATFIS HGNTARLAKE
HGDIKLAQIC GMIASDEKRH ETAYTKIVEK LFEVDPDGTV MAFADMMRKK IAMPAHLMYD GLDDNLFDNY SAVAQRIGVY
TAKDYADILE FLVGRWKVED LTGLSSEGRK AQDYVCGLPP RIRRLEERAQ ARVKESSKIR FSWIHDREVL L*