GBrowse Details

Vigan.01G284700.01

Basic Information:
Name: Vigan.01G284700.01
Multiple alignment
Variant Information
Position: Chr01:40524542..40528976 (- strand)
Length: 4435
Functional Information:
Description: Similar to Uncharacterized protein. [I1KLV7, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.25,4.48,20.54,26.37,197.52,17.72,89.59,20.45
Arabidopsis thaliana homolog: AT1G05710.2
Automatic updates:
Name: KT031098 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001248668 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527660 (LOC100527660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:40524542..40524848 (- strand)
Length: 307
Type: three_prime_UTR
Position: Chr01:40524849..40525004 (- strand)
Length: 156
Type: CDS
Position: Chr01:40525504..40525551 (- strand)
Length: 48
Type: CDS
Position: Chr01:40525728..40525793 (- strand)
Length: 66
Type: CDS
Position: Chr01:40525983..40526048 (- strand)
Length: 66
Type: CDS
Position: Chr01:40526472..40526597 (- strand)
Length: 126
Type: CDS
Position: Chr01:40528554..40528595 (- strand)
Length: 42
Type: CDS
Position: Chr01:40528596..40528976 (- strand)
Length: 381
Type: five_prime_UTR


>Vigan.01G284700.01
TTTTGACATT AACCTGTTCC TCCTTCTTCT TCTTCTCCTT CTTCTTTCTC CACAACAAGC CACACACGCC TCTGTATTAT
TTTTTTCTCA GCTTCACTTT CTTTTCCTCC ATTTATGAGG TTTCACTAGT TTTTCTTTCT AGGATCAGTA CTTCACTTCT
TTCATTGTCC CATATATGCC TCTGTTCCCC ACACTGCATG CTACTTTTTC TAAGTTTTTG AATTTTCTTA CCATAGTATT
GCAATGAAAT TCTAATCACA GGCACTGCTT AAAGTTTCAA GCTTTGCAAC TTTTGGAAGA TACCCATCTA ACCATTTCAG
TTGCCTAAGG AAGGGGTTTT GGTTTCAACC ATTCCTGCTT TTACCTCCAA AAGGGTCATA GATGATAGCC AGCTCTTTCT
GCAATGCTGA TTCTATGTTT TCAAGAGAAG AGGGGATAGA TGTTAGAAAG ATGATGGAGC ATAAAAGGAG TCCCTGCTCT
GTTGACCAAA GCAGTTATAC TTCTATTGCA TCTAAAAGGC AAAAGGCTGA TTTATCTATC AGCACTAAGG AGAGGAAGGA
GAAGATTGGG GAACGAATTG TTGCTCTTCA GCAGCTTGTT TCACCATATG GAAAGACAGA TACATCTTCT GTTCTAAAGG
AGGCAATGGA ATACATAGGA TTCCTTCATA AACAAGTTAA GCTGCTCAGT GCTCCATATC TTGAAACTTC AGCAGCAGCC
AAGATGCAGG GTATGGAAGC ATGCAGCCTG AGGAGTAGAG GGTTATGCCT TGTTCCTGTG TCATTTACAA TTGGAGTTGC
TGAGAGCAAT GGTGCAGATA TCTGGGCTCC CATTAAAACT ACAACTTCAC CTAAATTGGA GAATGATGTG TCTCAATTTC
ATTGACAAAG TTTCTCACTT TTATTGTAGC CTAAAGGTTG CTATGCTAAG TTGCTAAAGC AGTGTAGTGG CATGAAAATT
TGTCATCATA CATCTAGATG GAATCCTAAT AGCTAAAATA GTTAAAGCAT TAAAAGAACT TTCTAGTCAT GAAGCTGTTC
CACACCTTTA AGATTTTAAA TGGGTGATGG GGCTAAGCTT CCTTAATTTC TTGTGCTGAT TATTAAGTGT ATATTTCAAA
ATTTCTAGTT GTATAATGAT TCCATGTACT GATTAGCTTA ATGAAAGTCG TTTCTTGATT TGATGAAAGA AA

>Vigan.01G284700.01
ATGATAGCCA GCTCTTTCTG CAATGCTGAT TCTATGTTTT CAAGAGAAGA GGGGATAGAT GTTAGAAAGA TGATGGAGCA
TAAAAGGAGT CCCTGCTCTG TTGACCAAAG CAGTTATACT TCTATTGCAT CTAAAAGGCA AAAGGCTGAT TTATCTATCA
GCACTAAGGA GAGGAAGGAG AAGATTGGGG AACGAATTGT TGCTCTTCAG CAGCTTGTTT CACCATATGG AAAGACAGAT
ACATCTTCTG TTCTAAAGGA GGCAATGGAA TACATAGGAT TCCTTCATAA ACAAGTTAAG CTGCTCAGTG CTCCATATCT
TGAAACTTCA GCAGCAGCCA AGATGCAGGG TATGGAAGCA TGCAGCCTGA GGAGTAGAGG GTTATGCCTT GTTCCTGTGT
CATTTACAAT TGGAGTTGCT GAGAGCAATG GTGCAGATAT CTGGGCTCCC ATTAAAACTA CAACTTCACC TAAATTGGAG
AATGATGTGT CTCAATTTCA TTGA

>Vigan.01G284700.01
MIASSFCNAD SMFSREEGID VRKMMEHKRS PCSVDQSSYT SIASKRQKAD LSISTKERKE KIGERIVALQ QLVSPYGKTD
TSSVLKEAME YIGFLHKQVK LLSAPYLETS AAAKMQGMEA CSLRSRGLCL VPVSFTIGVA ESNGADIWAP IKTTTSPKLE
NDVSQFH*