GBrowse Details

Vigan.01G291600.01

Basic Information:
Name: Vigan.01G291600.01
Multiple alignment
Variant Information
Position: Chr01:41448790..41453805 (+ strand)
Length: 5016
Functional Information:
Description: Similar to Serine hydroxymethyltransferase. [C6ZJZ0, Glycine max]
GO: Biological Process: glycine metabolic process (GO:0006544)
Biological Process: L-serine metabolic process (GO:0006563)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glycine hydroxymethyltransferase activity (GO:0004372)
Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro: Serine hydroxymethyltransferase (IPR001085)
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
Pyridoxal phosphate-dependent transferase (IPR015424)
Serine hydroxymethyltransferase, pyridoxal phosphate binding site (IPR019798)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.25,0.22,44.51,936.95,0.31,19.56,1.59,97.88
Arabidopsis thaliana homolog: AT4G13890.1, AT4G13930.1, AT4G32520.1, AT4G37930.1, AT5G26780.3
Automatic updates:
Name: NM_001250580 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max serine hydroxymethyltransferase 5 (LOC100499635), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:41448790..41449015 (+ strand)
Length: 226
Type: five_prime_UTR
Position: Chr01:41449016..41449105 (+ strand)
Length: 90
Type: CDS
Position: Chr01:41449184..41449234 (+ strand)
Length: 51
Type: CDS
Position: Chr01:41449322..41449408 (+ strand)
Length: 87
Type: CDS
Position: Chr01:41449558..41449679 (+ strand)
Length: 122
Type: CDS
Position: Chr01:41450382..41450458 (+ strand)
Length: 77
Type: CDS
Position: Chr01:41450823..41450947 (+ strand)
Length: 125
Type: CDS
Position: Chr01:41451263..41451355 (+ strand)
Length: 93
Type: CDS
Position: Chr01:41451476..41451568 (+ strand)
Length: 93
Type: CDS
Position: Chr01:41451702..41451899 (+ strand)
Length: 198
Type: CDS
Position: Chr01:41452046..41452150 (+ strand)
Length: 105
Type: CDS
Position: Chr01:41452433..41452498 (+ strand)
Length: 66
Type: CDS
Position: Chr01:41452607..41452684 (+ strand)
Length: 78
Type: CDS
Position: Chr01:41452910..41453021 (+ strand)
Length: 112
Type: CDS
Position: Chr01:41453097..41453207 (+ strand)
Length: 111
Type: CDS
Position: Chr01:41453349..41453497 (+ strand)
Length: 149
Type: CDS
Position: Chr01:41453498..41453805 (+ strand)
Length: 308
Type: three_prime_UTR


>Vigan.01G291600.01
ATTTCTCCTT CAATTTTTTA ATATTTTTTT ATACAATATA TTTATGCATT ATTATTAATA CTATTATTTA AAAAAATAGC
GAAAGGTCCA ACGGAATCCA AAATCTGAAA GTGGGTCCCG CCTGGCGCCA AGCGAAAAAC CGAGAGCAGT GATTGGGATT
GGGATAACAA GGCATCGAAC GAGTTCATCT TCACAAACAC ACTCTGTATC TCTGTGTGTA CGAGAAATGG CGATGGCAAT
GGCGCTTCGC AGGCTTTCGT CTTCAATTGA GAAGCCTATG CGCCCTCTCT TCAATGCCGG TTCCATCTAC TTCAAGTCAT
CTTTGCCTGA CGAAGCTGTC TACGACAAGG AGCGACCCGG AGTTACATGG CCCAAGCAGT TGAATGCTCC ACTGGAAGCT
GTTGATCCTG AGATTGCTAA TATTATTGAG CTTGAGAAAG CCAGGCAATG GAAGGGGCTG GAACTGATAC CCTCAGAAAA
TTTCACTTCT GTGTCTGTCA TGCAAGCGGT TGGGTCTGTC ATGACCAACA AATACAGTGA GGGGTATCCT GGTGCAAGAT
ATTATGGTGG AAATGAGTAT ATTGACATGG CTGAAACACT GTGCCAGAAT CGTGCCCTTG AGGCGTTTAG ATTGGATCCC
GCTAAATGGG GAGTGAACGT GCAGCCTCTG TCTGGGTCTC CCGCAAATTT TCATGTTTAC ACTGCATTGC TAAAACCCCA
TGAAAGAATC ATGGCACTCG ATCTTCCTCA TGGTGGCCAT CTTTCTCATG GATATCAGAC TGATACCAAA AAGATATCTG
CAGTCTCCAT ATTTTTTGAG ACAATGCCAT ATAGACTAGA CGAAAGTACA GGATACATCG ACTATGACCA GTTGGAGAAA
ACGGCTACAC TCTTCAGGCC AAAATTAATT GTTGCTGGAG CCAGTGCTTA TGCACGTCTG TATGATTACG CACGTGTACG
GAAGGTTTGC GATAAACAGA AAGCTATCTT ATTGGCAGAT ATGGCACATA TCAGTGGATT GGTTGCAGCT GGTGTTATCC
AATCACCTTT TGATTATGCA GATATAGTTA CTACCACAAC TCACAAGTCA CTTCGGGGAC CACGAGGAGC CATGATATTC
TTCAGGAAAG GAGTTAAAGA AACTAACAAA CAAGGAAAAG AGGTTCTCTA CGACTATGAG GACAAAATCA ACCAAGCTGT
TTTCCCTGGA CTACAAGGTG GCCCTCACAA CCACACTATT ACTGGTTTAG CTGTTGCATT GAAGCAGGCT ACAACTCCAG
AATATAGAGC ATATCAAGAG CAAGTTCTCA GCAACAGCTC AAAATTTGCA CAAGCTCTGA GTGAGAGGGG CTATGACCTT
GTTTCTGGTG GAACTGATAA TCATCTAGTT TTAGTGAATC TGAAAACTAA GGGTATCGAT GGCTCCAGAG TTGAGAAGGT
GTTGGAAGCA GTTCATATTG CAGCTAATAA AAACACTGTT CCTGGAGATG TGTCTGCTAT GGTTCCTGGT GGCATCAGGA
TGGGAACCCC TGCTCTTACT TCTAGAGGAT TTGTTGAGGA GGATTTTGTT AAGGTAGCAG AGTTTTTTGA TGCAGCTGTA
AAGTTGGCTT TGAAGGTTAA AGCAGAGAGC CAAGGAACAA AACTGAAGGA CTTCGTGGCC ACTATTCAGT CATCTTCTAC
CATTCAATCA GAGATAGCAA AACTCCGACA TGATGTTGAG GAGTATGCAA AACAATTTCC AACCATTGGT TTTGAAAAAG
CAACCATGAA ATACAAGAAT TGAGAGAAAA AAATTTCCAT TAGGTATGTG TTATTCTTTT CTCGTTTTCT CATTAGTTTA
TTCATTTTCG TTTATTTGTT GATAAGGTCA TATAACACAA GAGGTAGTTG GACACATCTG AAAGGTGGTG CACTATGGAC
TTTGTTCTTG TCTCATTCAA ATAACATTTC ATTTCATAGT CTACTCAAAG CTAAAATTTA CAGTAAAAGA AAAGCAAAGC
AAAGCGATGC CAATAGCTGT CATTAATCTC TGATAAATTT AAAAACTGAT ATAAATGAGT GATTCTTTTT ACTCATTTGT
ATTGTCCGGG A

>Vigan.01G291600.01
ATGGCGATGG CAATGGCGCT TCGCAGGCTT TCGTCTTCAA TTGAGAAGCC TATGCGCCCT CTCTTCAATG CCGGTTCCAT
CTACTTCAAG TCATCTTTGC CTGACGAAGC TGTCTACGAC AAGGAGCGAC CCGGAGTTAC ATGGCCCAAG CAGTTGAATG
CTCCACTGGA AGCTGTTGAT CCTGAGATTG CTAATATTAT TGAGCTTGAG AAAGCCAGGC AATGGAAGGG GCTGGAACTG
ATACCCTCAG AAAATTTCAC TTCTGTGTCT GTCATGCAAG CGGTTGGGTC TGTCATGACC AACAAATACA GTGAGGGGTA
TCCTGGTGCA AGATATTATG GTGGAAATGA GTATATTGAC ATGGCTGAAA CACTGTGCCA GAATCGTGCC CTTGAGGCGT
TTAGATTGGA TCCCGCTAAA TGGGGAGTGA ACGTGCAGCC TCTGTCTGGG TCTCCCGCAA ATTTTCATGT TTACACTGCA
TTGCTAAAAC CCCATGAAAG AATCATGGCA CTCGATCTTC CTCATGGTGG CCATCTTTCT CATGGATATC AGACTGATAC
CAAAAAGATA TCTGCAGTCT CCATATTTTT TGAGACAATG CCATATAGAC TAGACGAAAG TACAGGATAC ATCGACTATG
ACCAGTTGGA GAAAACGGCT ACACTCTTCA GGCCAAAATT AATTGTTGCT GGAGCCAGTG CTTATGCACG TCTGTATGAT
TACGCACGTG TACGGAAGGT TTGCGATAAA CAGAAAGCTA TCTTATTGGC AGATATGGCA CATATCAGTG GATTGGTTGC
AGCTGGTGTT ATCCAATCAC CTTTTGATTA TGCAGATATA GTTACTACCA CAACTCACAA GTCACTTCGG GGACCACGAG
GAGCCATGAT ATTCTTCAGG AAAGGAGTTA AAGAAACTAA CAAACAAGGA AAAGAGGTTC TCTACGACTA TGAGGACAAA
ATCAACCAAG CTGTTTTCCC TGGACTACAA GGTGGCCCTC ACAACCACAC TATTACTGGT TTAGCTGTTG CATTGAAGCA
GGCTACAACT CCAGAATATA GAGCATATCA AGAGCAAGTT CTCAGCAACA GCTCAAAATT TGCACAAGCT CTGAGTGAGA
GGGGCTATGA CCTTGTTTCT GGTGGAACTG ATAATCATCT AGTTTTAGTG AATCTGAAAA CTAAGGGTAT CGATGGCTCC
AGAGTTGAGA AGGTGTTGGA AGCAGTTCAT ATTGCAGCTA ATAAAAACAC TGTTCCTGGA GATGTGTCTG CTATGGTTCC
TGGTGGCATC AGGATGGGAA CCCCTGCTCT TACTTCTAGA GGATTTGTTG AGGAGGATTT TGTTAAGGTA GCAGAGTTTT
TTGATGCAGC TGTAAAGTTG GCTTTGAAGG TTAAAGCAGA GAGCCAAGGA ACAAAACTGA AGGACTTCGT GGCCACTATT
CAGTCATCTT CTACCATTCA ATCAGAGATA GCAAAACTCC GACATGATGT TGAGGAGTAT GCAAAACAAT TTCCAACCAT
TGGTTTTGAA AAAGCAACCA TGAAATACAA GAATTGA

>Vigan.01G291600.01
MAMAMALRRL SSSIEKPMRP LFNAGSIYFK SSLPDEAVYD KERPGVTWPK QLNAPLEAVD PEIANIIELE KARQWKGLEL
IPSENFTSVS VMQAVGSVMT NKYSEGYPGA RYYGGNEYID MAETLCQNRA LEAFRLDPAK WGVNVQPLSG SPANFHVYTA
LLKPHERIMA LDLPHGGHLS HGYQTDTKKI SAVSIFFETM PYRLDESTGY IDYDQLEKTA TLFRPKLIVA GASAYARLYD
YARVRKVCDK QKAILLADMA HISGLVAAGV IQSPFDYADI VTTTTHKSLR GPRGAMIFFR KGVKETNKQG KEVLYDYEDK
INQAVFPGLQ GGPHNHTITG LAVALKQATT PEYRAYQEQV LSNSSKFAQA LSERGYDLVS GGTDNHLVLV NLKTKGIDGS
RVEKVLEAVH IAANKNTVPG DVSAMVPGGI RMGTPALTSR GFVEEDFVKV AEFFDAAVKL ALKVKAESQG TKLKDFVATI
QSSSTIQSEI AKLRHDVEEY AKQFPTIGFE KATMKYKN*