GBrowse Details

Vigan.01G295300.01

Basic Information:
Name: Vigan.01G295300.01
Multiple alignment
Variant Information
Position: Chr01:42083758..42088572 (+ strand)
Length: 4815
Functional Information:
Description: Similar to Inositol-tetrakisphosphate 1-kinase. [V7CGC1, Phaseolus vulgaris]
GO: Biological Process: inositol trisphosphate metabolic process (GO:0032957)
Cellular Component: intracellular (GO:0005622)
Molecular Function: magnesium ion binding (GO:0000287)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: inositol tetrakisphosphate 1-kinase activity (GO:0047325)
Molecular Function: inositol-1,3,4-trisphosphate 6-kinase activity (GO:0052725)
Molecular Function: inositol-1,3,4-trisphosphate 5-kinase activity (GO:0052726)
InterPro: Inositol-tetrakisphosphate 1-kinase (IPR008656)
Inositol-tetrakisphosphate 1-kinase, plant (IPR017427)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.58,9.40,2.32,3.19,9.42,13.93,4.41,3.14
Arabidopsis thaliana homolog: AT5G16760.1
Automatic updates:
Name: NM_001250900 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max inositol phosphate kinase (ITPK1), mRNA.
PubMed ID: 18474240 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:42083758..42084178 (+ strand)
Length: 421
Type: five_prime_UTR
Position: Chr01:42084179..42085198 (+ strand)
Length: 1020
Type: CDS
Position: Chr01:42087539..42087592 (+ strand)
Length: 54
Type: CDS
Position: Chr01:42087593..42087625 (+ strand)
Length: 33
Type: three_prime_UTR
Position: Chr01:42088556..42088572 (+ strand)
Length: 17
Type: three_prime_UTR


>Vigan.01G295300.01
ATTCTCAGTA TCACCACATT TGCACACGCG CTGCAATAAA GCGGCGCCAT CCCGCAACCC AATCCCCAGA ATATGCCACG
TCACACCTTC TCCCTCATAC CCCAGTCACC CTATCATTCC CCCTTCATCC TCACCAACCC TAGTCTAAGC TATATATATC
CCCATCCGGT TACCATCCTT TCTCTCTCTC CGTTTCTCTT TTCTCTTTTC TCTCCTTCTC TCTCTCTCCG TTTCTCTTTT
CTCTTTTCTC TCCTTCTCTC TCTCTCCGTT TCTCTTTTCT CTTTTCTCTC CTTCTCTCAT CCGTTCCGTT CGTTTTTTCC
CTCTGCAAAA TTCTCTTCCC GACCAACAAA ACCCAGGCCC TCCAAATTAG GGTTTCTCCC CGGGAATGTG ATTCAGCGCG
CGGCACGCAG AGCGAACATC AATGGCGGAG AAGACATTCG GCGGCGTGAT AGGGTATGCG CTGGCACCGA AGAAGCAGAA
CAGCTTTATC CGCGACTCAT TGGTGAGTCT AGCGAAATCG CGAGGGATCG AACTCGTTCG TGTGGACTCG GACAAGCCCC
TCGCGGATCA GGGCCCCTTC GATTGCGTCC TCCACAAGCT CTACGGCGAC GATTGGAAAC GCCAACTTCG AGAATTCCAG
TCTCGCTTCC CAAATGCGGT TATCCTCGAC GCGCCCGAAG CGATCGAGCG CCTCCACAAC CGAATCTCGA TGCTGCAGGT
CGTGTCGGAG CTCCGAATCC AGGACCGAAC CGAGACCTTT GGGATCCCAA AACAGATTGT GATATACGAC AAGGCCACGC
TAATGGACCC CCAGGCCGGG GATAGCCTCA AGTTTCCGGT GATTGCGAAG CCGCTTGTGG CCGACGGCAG TGCCAAGTCG
CACAAGATGG CGCTTGTGTT CACGCGCGAC GCGCTCGATA AGCTGAAGCC CCCGATCGTG CTGCAGGAGT TTGTCAACCA
CGGCGGCGTG ATCTTCAAGG TTTACGTGGT GGGCGAGCAC GTGCGGTGCG TGAAGCGCAA GTCCCTACCC GATGTGTCGG
AGGAGAAGAC GGTGGGCGTT TCGGAGAACC TTCTGTCGTT TTCGCAGGTC TCCAACCTGG CTAACCACGA CGTTGAAAAC
GACAGCGATG GCTATTACCG GCTGATGCAT TTGGAGGACA CCGAGATGCC CCCAAATGCC TTTGTCGTCG ACATCGCTAG
GGGCCTCAGG CGGGCCCTTA AGTTGAACCT CTTCAATTTC GACGTCATAA GGGACGCTCG ATATGGCAAT CGATATCTCA
TCATTGATAT CAATTATTTC CCTGGCTACG CCAAAATGCC TGGATACGAG GCCGTTTTGA CCCAGTTTTT CTGCGACGTC
ATGTTGAAGA AAGAGCAAGA AGAACAACAG GGGGAGGATC ACGATCCCGT TTCTACCAAG GACAATGAGG AATCTTTTCA
GGTTGAATCC TGTCCAAGTT TTTATGCCAA ACAAGGAGTT TGTTCTCATC ATTAGTCTTA GGAAGAGAGC CAGTGATGCT
ATTTTCAAGG AAGGGAAGGC AGCGG

>Vigan.01G295300.01
ATGGCGGAGA AGACATTCGG CGGCGTGATA GGGTATGCGC TGGCACCGAA GAAGCAGAAC AGCTTTATCC GCGACTCATT
GGTGAGTCTA GCGAAATCGC GAGGGATCGA ACTCGTTCGT GTGGACTCGG ACAAGCCCCT CGCGGATCAG GGCCCCTTCG
ATTGCGTCCT CCACAAGCTC TACGGCGACG ATTGGAAACG CCAACTTCGA GAATTCCAGT CTCGCTTCCC AAATGCGGTT
ATCCTCGACG CGCCCGAAGC GATCGAGCGC CTCCACAACC GAATCTCGAT GCTGCAGGTC GTGTCGGAGC TCCGAATCCA
GGACCGAACC GAGACCTTTG GGATCCCAAA ACAGATTGTG ATATACGACA AGGCCACGCT AATGGACCCC CAGGCCGGGG
ATAGCCTCAA GTTTCCGGTG ATTGCGAAGC CGCTTGTGGC CGACGGCAGT GCCAAGTCGC ACAAGATGGC GCTTGTGTTC
ACGCGCGACG CGCTCGATAA GCTGAAGCCC CCGATCGTGC TGCAGGAGTT TGTCAACCAC GGCGGCGTGA TCTTCAAGGT
TTACGTGGTG GGCGAGCACG TGCGGTGCGT GAAGCGCAAG TCCCTACCCG ATGTGTCGGA GGAGAAGACG GTGGGCGTTT
CGGAGAACCT TCTGTCGTTT TCGCAGGTCT CCAACCTGGC TAACCACGAC GTTGAAAACG ACAGCGATGG CTATTACCGG
CTGATGCATT TGGAGGACAC CGAGATGCCC CCAAATGCCT TTGTCGTCGA CATCGCTAGG GGCCTCAGGC GGGCCCTTAA
GTTGAACCTC TTCAATTTCG ACGTCATAAG GGACGCTCGA TATGGCAATC GATATCTCAT CATTGATATC AATTATTTCC
CTGGCTACGC CAAAATGCCT GGATACGAGG CCGTTTTGAC CCAGTTTTTC TGCGACGTCA TGTTGAAGAA AGAGCAAGAA
GAACAACAGG GGGAGGATCA CGATCCCGTT TCTACCAAGG ACAATGAGGA ATCTTTTCAG GTTGAATCCT GTCCAAGTTT
TTATGCCAAA CAAGGAGTTT GTTCTCATCA TTAG

>Vigan.01G295300.01
MAEKTFGGVI GYALAPKKQN SFIRDSLVSL AKSRGIELVR VDSDKPLADQ GPFDCVLHKL YGDDWKRQLR EFQSRFPNAV
ILDAPEAIER LHNRISMLQV VSELRIQDRT ETFGIPKQIV IYDKATLMDP QAGDSLKFPV IAKPLVADGS AKSHKMALVF
TRDALDKLKP PIVLQEFVNH GGVIFKVYVV GEHVRCVKRK SLPDVSEEKT VGVSENLLSF SQVSNLANHD VENDSDGYYR
LMHLEDTEMP PNAFVVDIAR GLRRALKLNL FNFDVIRDAR YGNRYLIIDI NYFPGYAKMP GYEAVLTQFF CDVMLKKEQE
EQQGEDHDPV STKDNEESFQ VESCPSFYAK QGVCSHH*