GBrowse Details

Vigan.01G296400.01

Basic Information:
Name: Vigan.01G296400.01
Multiple alignment
Variant Information
Position: Chr01:42193130..42197429 (+ strand)
Length: 4300
Functional Information:
Description: Similar to Syntaxin. [Q8LJR4, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: vesicle-mediated transport (GO:0016192)
Cellular Component: membrane (GO:0016020)
Molecular Function: SNAP receptor activity (GO:0005484)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Syntaxin, N-terminal domain (IPR006011)
Syntaxin/epimorphin, conserved site (IPR006012)
t-SNARE (IPR010989)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:113.27,50.53,19.44,26.29,25.10,31.12,38.03,22.67
Structure :
Position: Chr01:42193130..42193368 (+ strand)
Length: 239
Type: five_prime_UTR
Position: Chr01:42193369..42193556 (+ strand)
Length: 188
Type: CDS
Position: Chr01:42194182..42194275 (+ strand)
Length: 94
Type: CDS
Position: Chr01:42194558..42194697 (+ strand)
Length: 140
Type: CDS
Position: Chr01:42194943..42195017 (+ strand)
Length: 75
Type: CDS
Position: Chr01:42195583..42195740 (+ strand)
Length: 158
Type: CDS
Position: Chr01:42195858..42196069 (+ strand)
Length: 212
Type: CDS
Position: Chr01:42196070..42197429 (+ strand)
Length: 1360
Type: three_prime_UTR


>Vigan.01G296400.01
CGTGTTTGAA GAGCGCGTCC ACGCCAATGT AGCGGCAGGG AATTACAACC ATAGAGACCC ACCGAAGAAA CTACCTCACG
GAATCCAAAT CTTCGTTCGC TTCCCTTTTC TTGCATTGCC CTAATTCCTC AAATTCCCCT CTCTTTATTC TCCCAGATCC
CGGTAAACGC CTCCTTCGCC TTTTCCCTCC CTTTCTCAGG AAAATTCTCC CAATTTTCTC GAGAAAGTGA AACGGAATTA
TGAGCTTTCA GGACATCGAG GCTGGTCGGC CCTTCGGTTC CAGGCGTGGC TTGACCAACG GCAAGCAGGA CCCCACGCAG
GCAGTGGCTG CCGGAATATT CCAGATCAAC ACCGCCGTCT CCACCTTCCA GAGACTCGTC AACACCCTCG GAACCCCCAA
AGATACCCCC GAGCTCCGTG AGAAGCTCCA CAAGACAAGA CTACATATTG GGCAATTGGT GAAGGATACA TCAGCTAAAC
TTAAGCAAGC CAGTGACATT GATCACCATG CTGAAGTTAA TGCAAGCAAG AAGATCGCAG ATGCTAAACT TGCGAAAGAT
TTTCAAGCAG TATTGAAAGA GTTTCAGAAG GCACAACGTC TTGCAGCTGA AAGGGAAACA GCATACACTC CTTTTGTTCC
CCAAGCAGTC CTTCCTTCCA GCTATACTGC TGGTGAATTA GGTGTTGGTC CTGATAAATC ACCAGAAGAG CGTGCCTTAC
TCGTGGAATC AAGGAGGCAG GAGGTTTTGT TCTTAGATAA TGAGATTGCT TTTAACGAGG CCATCATTGA GGAAAGGGAG
CAAGGCATTC AAGAAATACA GCAGCAAATT GGTGAAGTTA ACGAGATCTT CAAAGATCTT GCTGTGCTTG TCCATGAGCA
AGGAACCATG ATTGATGATA TTGGCTCCAA CATTGAGAAC TCCCATGCAG CAACAGCACA AGCAAAATCT CAACTTTTAA
AAGCTTCAAA GACCCAAAGA TCAAATTCCT CTTTGGTAAT GTATCAATTT CTAATTGCCA CAAAATTACT ATACTCAACC
TCCTTCCATG AAATGACTTT TTATATGTGG AATCTCCAGA GGAGATATCT TCTAAAGAGG GTTTGACTAA TGGCCCTGAC
CACAGAATGG AATTTGATTT AAAAATGATT TTGTATTGAC TTGTTGTGCT GATGTATTTA CTTGCAAAAT TAAATTTATT
ATGATTACAG TACATGACAC GTATTTTGGA AATAACAATG GATTTATTTG AATAAACTCC TCCACAAGAA GAAAATACGA
AGGAAAAATT AATTGAACTT ATATAAATTT AAACTAGTTT ACGGATAAGC TAATATGTAG AATTTCTCAA AAATATTTTT
AACTTGTGCA TGAACTAATT TTACATTATG GAGAAAAGTT TATTTCATTT TATATTATTT TCTTCTTCTA GAAATACTTA
TAGAGAAACG TATTCTGAAC ATACTATACA TGCAGCTTAA ATCTTTGTAG GTGGATTAGC CTGTAATTTT GTCTATTATT
ATCAGTTTGC ACATTGCAAA CAATATTTGT TTTCCATTTT GAAAGTAGGA TTATTGCATC GTTGTCATAA TATGGAAGGG
AAGAAGTGGT TGATGGAATA AGTAATAGCT TATGTAATTT CCTACTTAAA GGAGTTATCA TAGACTGTCT ACCATCTTGA
AAGACTTGTT TGTACATCGT TGGTCAATGT TTAGTCTTTT TTTCACCCTT TTGAAATCTT GGTGTATTTC CCTTGTTAAC
CTTGTGCTCT TTTATTTTCT CCATAGACAT GCTTGCTTTT GGTGATTTTT GGGATTGTGC TTCTGATCGT GATCATAGTT
CTTGCTGCTT AGACAAATAT TGTCTCAATT CCATTATGAA GTAAATGCAT ATATACAGAG CAGCAGATAT CATCTTCCTT
GCTGAAGATA TAACTTGATC GGTGTTTTGT TGGATCTGGC GATTGACTGG AGTTTGTTGC ATCTGATTTC AGTACAAGAT
GTGGGAATTC CCATGATTTT GTTGTGGGAT GTTATGTTCT CTCTATATGT TAGTGTTTGG GGTTTTCAAA TTTGTCACGA
CTTATGTTGT AAGTTCTCTC CTTGTTTCTT TAATTGAAAA GGTATTAATT CTTTCATTTC CCTTGTAAAT GCAACACTGA
AACTGGCTGG TTGTGCTGAC TAATCAGTAA AACCTTCGTA TATGGTAATA TGTTTCTCTT TTAGTGTTTT TCTTTCCCAA
AGTTGGAACT GTAATGTGTA TGAAGAAAAA ATTTGGATGT GTTTGATGAG TTTATTCGGT GAGTGACATT TATTTATTCG
TGTGGGGGAA ATTTCTCGTC TGTGTATTCT GAAAGCCCAA AAGGCAAGGA AGGTGTGGAA AATTGCTTTA GTTTTAGTAT
TTATTTTTTT AGATAACGGA AACCCTTTTT CATTCGAAGG TAAAATTCAT ACTTCTAAGA TTGGCC

>Vigan.01G296400.01
ATGAGCTTTC AGGACATCGA GGCTGGTCGG CCCTTCGGTT CCAGGCGTGG CTTGACCAAC GGCAAGCAGG ACCCCACGCA
GGCAGTGGCT GCCGGAATAT TCCAGATCAA CACCGCCGTC TCCACCTTCC AGAGACTCGT CAACACCCTC GGAACCCCCA
AAGATACCCC CGAGCTCCGT GAGAAGCTCC ACAAGACAAG ACTACATATT GGGCAATTGG TGAAGGATAC ATCAGCTAAA
CTTAAGCAAG CCAGTGACAT TGATCACCAT GCTGAAGTTA ATGCAAGCAA GAAGATCGCA GATGCTAAAC TTGCGAAAGA
TTTTCAAGCA GTATTGAAAG AGTTTCAGAA GGCACAACGT CTTGCAGCTG AAAGGGAAAC AGCATACACT CCTTTTGTTC
CCCAAGCAGT CCTTCCTTCC AGCTATACTG CTGGTGAATT AGGTGTTGGT CCTGATAAAT CACCAGAAGA GCGTGCCTTA
CTCGTGGAAT CAAGGAGGCA GGAGGTTTTG TTCTTAGATA ATGAGATTGC TTTTAACGAG GCCATCATTG AGGAAAGGGA
GCAAGGCATT CAAGAAATAC AGCAGCAAAT TGGTGAAGTT AACGAGATCT TCAAAGATCT TGCTGTGCTT GTCCATGAGC
AAGGAACCAT GATTGATGAT ATTGGCTCCA ACATTGAGAA CTCCCATGCA GCAACAGCAC AAGCAAAATC TCAACTTTTA
AAAGCTTCAA AGACCCAAAG ATCAAATTCC TCTTTGGTAA TGTATCAATT TCTAATTGCC ACAAAATTAC TATACTCAAC
CTCCTTCCAT GAAATGACTT TTTATATGTG GAATCTCCAG AGGAGATATC TTCTAAAGAG GGTTTGA

>Vigan.01G296400.01
MSFQDIEAGR PFGSRRGLTN GKQDPTQAVA AGIFQINTAV STFQRLVNTL GTPKDTPELR EKLHKTRLHI GQLVKDTSAK
LKQASDIDHH AEVNASKKIA DAKLAKDFQA VLKEFQKAQR LAAERETAYT PFVPQAVLPS SYTAGELGVG PDKSPEERAL
LVESRRQEVL FLDNEIAFNE AIIEEREQGI QEIQQQIGEV NEIFKDLAVL VHEQGTMIDD IGSNIENSHA ATAQAKSQLL
KASKTQRSNS SLVMYQFLIA TKLLYSTSFH EMTFYMWNLQ RRYLLKRV*