VIGGS:GBrowse

Vigan.01G296600.01

Basic Information:

Name:	Vigan.01G296600.01 Multiple alignment Variant Information
Position:	Chr01:42209130..42214315 (+ strand)
Length:	5186

Functional Information:

Description:	Similar to Heat shock factor protein hsf8-related. [Q564C8, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:24.34,17.73,2.37,5.51,4.95,2.82,4.79,3.69
Arabidopsis thaliana homolog:	AT1G32330.1

Automatic updates:

Name:	NM_001249811 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max heat stress transcription factor 33 (HSF-33), mRNA.
PubMed ID:	25416131 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:42209130..42209245 (+ strand)
Length:	116
Type:	five_prime_UTR

Position:	Chr01:42209246..42209503 (+ strand)
Length:	258
Type:	CDS

Position:	Chr01:42212829..42214091 (+ strand)
Length:	1263
Type:	CDS

Position:	Chr01:42214092..42214315 (+ strand)
Length:	224
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G296600.01
AACTAGGGTT TGAGTTTTTC CTTTTCTCTG TAGAAATCAA GATTACACAT AACAAAACCC AGCATTTTTT TTCGCTTTAA
TTTTGGCTTC AGATTTTTTA TTATCGAAAT TGTGAAATGG AGGGAGCAGG CAGTGGGGGC GGAGAAGTGT CGACGGCGGG
GCCGACACCG ATTCCGAACG CTAACGCGCC GCCGCCTTTC CTGAGCAAGA CGTATGACAT GGTGGACGAC CCTTCGACGG
ACTCAATTGT GTCGTGGAGT CCAATGAACA ACAGCTTCAT TGTTTGGAAC CCTCCGGAGT TCGCCAGAGA CCTTTTGCCC
AAACACTTCA AGCACAATAA CTTCTCCAGC TTCGTTCGCC AGTTAAACAC CTACGGTTTT AGAAAGGTAG ACCCGGATCG
CTGGGAGTTT GCAAATGAGG GATTTTTAAG GGGTCAAAAG CACTTGCTTA AGACCATATC TCGGCGGAAA CCTGCCCATG
GTCATAATCA TCAACAAGCA CAACAAGTAC ACGGACAGAA TTCATCGGTT GGGGCTTGTG TAGAAGTTGG GAAGTTTGGA
CTTGAGGAAG AGGTTGAAAT TCTCAAGAGA GATAAGAATG TGCTCATGCA AGAGCTTGTG AGATTGAGGC AGCAGCAGCA
ATCTACTGAT AACCAGCTGC AGACTATGGT TCAGCGCCTT CAGGGAATGG AGCAACGGCA GCAACAAATG ATGTCATTCC
TTGCAAAGGC TGTTCAGAGC CCTGGTTTCT TATCTCAATT TGTACAACAG CAAAATGATA GTAATAGACG CTTAACAGAG
GCAAATAAAA AACGTCGACT GAAGCAGGAA GGTATTGGTG AAATGGAACA TACAGCTGCT TCTGATGGGC AAATTGTTAA
ATATCAACCT CTGATAAATG AAGCAGCAAA AGCAATGGTA AGGCAAATAA TGAAATTGGA TGCTTCTCGA CAAGAATCTT
TCAGTAATAA CCCCGATAAT TATTTGATTG GTGATCATTC ATCACCATCC AGTGAAATGG ACAGGGGAAA CTCTTTGAGT
CGATCTTCTG GAGTAACACT TCAAGAGGTC CCTCCAACTA AGGTGCAGTC TTCTTATGTT CCATCTGCAG CAAGGACTCA
AGGGCACGGT CCTTCAACAG GAAAATCTGA GATTCTATCT TCTTCCCAAG TTGCAGCCTG TGGAGAAGTT ACATATCCTA
ATCTAAATGT TTCAGTTGGG GAACCTAATG CACCTGCTAT CCCTGTTACT CAAACAGATG AAATAATGCC GGACCTTGCT
ACAATACCAG ATATAGTAGC AGGAAACATT CTCAATATTC CTCAAGAAAA TTATATGGCA CCAGAAACTG GTGGTGACGG
ATACATGGAT CCTACTTCAT TTGGGGTGAA TATGTCACTA CCCCTTGATT TTGATAGTAT TTCAACTGAA CCAGACATCG
ATGATTTGTT GAACAATCCT CACTTTTGGG ATGATATTGT GCGAACTCCG GTGTCAGAGG ATATTGAAAC GAATGGTACT
GAAGTATTCT ATGAGAATGA GTTGCAGCCA ACTGAAAATG GATGGGAAAA ATCTCAACAT ATGGACCTAC TTACTGAACA
GATGGGCTTA CTTTCTTCTG ATGCAAAAAA AAACTGAATG TCTTATGAAA ATGTACATTA ATAATTCATA TTGTTCAAGG
TAACCTTATC CCCAACAATG AGTGATGTTC TTTTAGTACT AATTACACCT GCAAGTGCTC ACTCAGAACT AACATGGATT
TTGTTTAGTC TGGCTTAGTT TGTGCATATC AGACCAAAAT TGTCTTGTTG TAGACTAATA TTGATTTTTT ACTTATATTT
TATGAAATAT TAATTGTGAA C

[show][hide][copy]CDS

>Vigan.01G296600.01
ATGGAGGGAG CAGGCAGTGG GGGCGGAGAA GTGTCGACGG CGGGGCCGAC ACCGATTCCG AACGCTAACG CGCCGCCGCC
TTTCCTGAGC AAGACGTATG ACATGGTGGA CGACCCTTCG ACGGACTCAA TTGTGTCGTG GAGTCCAATG AACAACAGCT
TCATTGTTTG GAACCCTCCG GAGTTCGCCA GAGACCTTTT GCCCAAACAC TTCAAGCACA ATAACTTCTC CAGCTTCGTT
CGCCAGTTAA ACACCTACGG TTTTAGAAAG GTAGACCCGG ATCGCTGGGA GTTTGCAAAT GAGGGATTTT TAAGGGGTCA
AAAGCACTTG CTTAAGACCA TATCTCGGCG GAAACCTGCC CATGGTCATA ATCATCAACA AGCACAACAA GTACACGGAC
AGAATTCATC GGTTGGGGCT TGTGTAGAAG TTGGGAAGTT TGGACTTGAG GAAGAGGTTG AAATTCTCAA GAGAGATAAG
AATGTGCTCA TGCAAGAGCT TGTGAGATTG AGGCAGCAGC AGCAATCTAC TGATAACCAG CTGCAGACTA TGGTTCAGCG
CCTTCAGGGA ATGGAGCAAC GGCAGCAACA AATGATGTCA TTCCTTGCAA AGGCTGTTCA GAGCCCTGGT TTCTTATCTC
AATTTGTACA ACAGCAAAAT GATAGTAATA GACGCTTAAC AGAGGCAAAT AAAAAACGTC GACTGAAGCA GGAAGGTATT
GGTGAAATGG AACATACAGC TGCTTCTGAT GGGCAAATTG TTAAATATCA ACCTCTGATA AATGAAGCAG CAAAAGCAAT
GGTAAGGCAA ATAATGAAAT TGGATGCTTC TCGACAAGAA TCTTTCAGTA ATAACCCCGA TAATTATTTG ATTGGTGATC
ATTCATCACC ATCCAGTGAA ATGGACAGGG GAAACTCTTT GAGTCGATCT TCTGGAGTAA CACTTCAAGA GGTCCCTCCA
ACTAAGGTGC AGTCTTCTTA TGTTCCATCT GCAGCAAGGA CTCAAGGGCA CGGTCCTTCA ACAGGAAAAT CTGAGATTCT
ATCTTCTTCC CAAGTTGCAG CCTGTGGAGA AGTTACATAT CCTAATCTAA ATGTTTCAGT TGGGGAACCT AATGCACCTG
CTATCCCTGT TACTCAAACA GATGAAATAA TGCCGGACCT TGCTACAATA CCAGATATAG TAGCAGGAAA CATTCTCAAT
ATTCCTCAAG AAAATTATAT GGCACCAGAA ACTGGTGGTG ACGGATACAT GGATCCTACT TCATTTGGGG TGAATATGTC
ACTACCCCTT GATTTTGATA GTATTTCAAC TGAACCAGAC ATCGATGATT TGTTGAACAA TCCTCACTTT TGGGATGATA
TTGTGCGAAC TCCGGTGTCA GAGGATATTG AAACGAATGG TACTGAAGTA TTCTATGAGA ATGAGTTGCA GCCAACTGAA
AATGGATGGG AAAAATCTCA ACATATGGAC CTACTTACTG AACAGATGGG CTTACTTTCT TCTGATGCAA AAAAAAACTG
A

[show][hide][copy]PROTEIN

>Vigan.01G296600.01
MEGAGSGGGE VSTAGPTPIP NANAPPPFLS KTYDMVDDPS TDSIVSWSPM NNSFIVWNPP EFARDLLPKH FKHNNFSSFV
RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKTISRRKPA HGHNHQQAQQ VHGQNSSVGA CVEVGKFGLE EEVEILKRDK
NVLMQELVRL RQQQQSTDNQ LQTMVQRLQG MEQRQQQMMS FLAKAVQSPG FLSQFVQQQN DSNRRLTEAN KKRRLKQEGI
GEMEHTAASD GQIVKYQPLI NEAAKAMVRQ IMKLDASRQE SFSNNPDNYL IGDHSSPSSE MDRGNSLSRS SGVTLQEVPP
TKVQSSYVPS AARTQGHGPS TGKSEILSSS QVAACGEVTY PNLNVSVGEP NAPAIPVTQT DEIMPDLATI PDIVAGNILN
IPQENYMAPE TGGDGYMDPT SFGVNMSLPL DFDSISTEPD IDDLLNNPHF WDDIVRTPVS EDIETNGTEV FYENELQPTE
NGWEKSQHMD LLTEQMGLLS SDAKKN*