GBrowse Details

Vigan.01G300600.01

Basic Information:
Name: Vigan.01G300600.01
Multiple alignment
Variant Information
Position: Chr01:42656759..42661989 (+ strand)
Length: 5231
Functional Information:
Description: Similar to D-aminoacyl-tRNA deacylase. [G7LG90, Medicago truncatula]
GO: Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
Molecular Function: D-aminoacyl-tRNA deacylase activity (GO:0051499)
InterPro: D-aminoacyl-tRNA deacylase (IPR007508)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.79,5.92,4.81,4.91,6.95,4.93,5.37,2.70
Arabidopsis thaliana homolog: AT2G03800.1
Automatic updates:
Name: NM_001253198 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max D-aminoacyl-tRNA deacylase-like (LOC100808796), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:42656759..42656774 (+ strand)
Length: 16
Type: five_prime_UTR
Position: Chr01:42656775..42657053 (+ strand)
Length: 279
Type: CDS
Position: Chr01:42657138..42657321 (+ strand)
Length: 184
Type: CDS
Position: Chr01:42657406..42657548 (+ strand)
Length: 143
Type: CDS
Position: Chr01:42657792..42657855 (+ strand)
Length: 64
Type: CDS
Position: Chr01:42659134..42659186 (+ strand)
Length: 53
Type: CDS
Position: Chr01:42659395..42659450 (+ strand)
Length: 56
Type: CDS
Position: Chr01:42659735..42659809 (+ strand)
Length: 75
Type: CDS
Position: Chr01:42660405..42660590 (+ strand)
Length: 186
Type: CDS
Position: Chr01:42661716..42661803 (+ strand)
Length: 88
Type: CDS
Position: Chr01:42661804..42661989 (+ strand)
Length: 186
Type: three_prime_UTR


>Vigan.01G300600.01
AATAATTTGG TAAGTGATGT TAGCAGTGGG CAAGCTATTG CAGCTTCCAT TTCTTTCGCT TGTAAACCAT GGGCTCAGAT
CTTCAAAGCC AATTTCCATT CGCTGTCGTA TAAATACATC ATATTCCTCC CGAATTACCC CCAACGCATT TTCACAACAC
AAACACAAAC ACAAACATCT CTCCGACAAA GTAATGGTGG CGCTCCTTGT GGCAACCTCC TCCGACCCTG CTTCCATCAA
CCCGGCCAAT GCGCTGTTGG CCATGCCCGG GTGGCAACCC GGTCCCCATT TCCAGGATGA TATGAAGAGC TTTGTGAATG
AAGGGGTGAG GGTGTTGCTG CATGCAAAGA GCATAGTGGA GGAGGATGAT TTAGACAGGA GGTGGGAGGA GGTGACTGGG
GAGGCTGTTA ATGAGGTCAT CTTCTTTAGC AAACACACTG CTGTGTCCAA CAAACCTGCC CTCACTGTCC ACCCCATTGG
CGTTCCTCAT TTGCGTGAAG GTGACGTTCC ACCTCAAGGT GGAAGACCTG GATGGGCAGC GCTGCCAAAT CCTAGGATGG
GGCCTTGGCT TCGCCTTTTG AAAAACATGG CTCAGGCTCA TAATCTGGTC CCTGAATTCG AGATTACTTT GGAGGCTACT
CACCATGGAC CGTTGACAAA TAAGCCGACC ATGTTTCTGG AGATTGGTAG TACTGAAGAC TACTGGAAGA GACAGGATGC
TGCTCAAGTT ATGGCACAGT TAGTCTGGGA AGGACTTGGA CTTGGAGGTG GGACAGATGT AGGAAACTGG AGCAGGGAGA
AGGATAACAA GAAAATTCTT CTTGGGATAG GTGGTGGACA TTATGCGCCT CGACATATGG ATGTAGTATT GAAAGATAAT
GTGTGGGTGG GTCACCTACT TTCTGGATAT TCAGTGCCAA TGGAAGATCC AAAGCAGTCA AAAGGAGAAA AAGATGTGGA
GATTGGTGGA ACATGGAGAG AGTCTATAAA GGCTGCATAT GAGGCCACTA AGTCTGCCTT TCCTGGTGGG GAAATTCTTG
CACACCTAGA CAACAAGAGT TTCAAGGGCT GGCAGAGGAA TGCTATAACA GGATTCCTTG CGGAGCAGAA CATTAAAATT
GGAAAACCGA ATAACTTCTA TTGAGGGCTG GCTGACTTTG GATGATATTA TGTCATCAAC TCTGCAGATT TTGACAGGCC
ATACTAGAAA TTTTATTCAG TTCCCTTGAG AGCATTGTGA TAGTTAAAGA ATAGCTGAAG TATGAGATGC ACTGATAAAT
TCCAATTCTT ATGAAAAACA GTATTTACTT TATTTAAAAT CATATAGCAG 

>Vigan.01G300600.01
ATGTTAGCAG TGGGCAAGCT ATTGCAGCTT CCATTTCTTT CGCTTGTAAA CCATGGGCTC AGATCTTCAA AGCCAATTTC
CATTCGCTGT CGTATAAATA CATCATATTC CTCCCGAATT ACCCCCAACG CATTTTCACA ACACAAACAC AAACACAAAC
ATCTCTCCGA CAAAGTAATG GTGGCGCTCC TTGTGGCAAC CTCCTCCGAC CCTGCTTCCA TCAACCCGGC CAATGCGCTG
TTGGCCATGC CCGGGTGGCA ACCCGGTCCC CATTTCCAGG ATGATATGAA GAGCTTTGTG AATGAAGGGG TGAGGGTGTT
GCTGCATGCA AAGAGCATAG TGGAGGAGGA TGATTTAGAC AGGAGGTGGG AGGAGGTGAC TGGGGAGGCT GTTAATGAGG
TCATCTTCTT TAGCAAACAC ACTGCTGTGT CCAACAAACC TGCCCTCACT GTCCACCCCA TTGGCGTTCC TCATTTGCGT
GAAGGTGACG TTCCACCTCA AGGTGGAAGA CCTGGATGGG CAGCGCTGCC AAATCCTAGG ATGGGGCCTT GGCTTCGCCT
TTTGAAAAAC ATGGCTCAGG CTCATAATCT GGTCCCTGAA TTCGAGATTA CTTTGGAGGC TACTCACCAT GGACCGTTGA
CAAATAAGCC GACCATGTTT CTGGAGATTG GTAGTACTGA AGACTACTGG AAGAGACAGG ATGCTGCTCA AGTTATGGCA
CAGTTAGTCT GGGAAGGACT TGGACTTGGA GGTGGGACAG ATGTAGGAAA CTGGAGCAGG GAGAAGGATA ACAAGAAAAT
TCTTCTTGGG ATAGGTGGTG GACATTATGC GCCTCGACAT ATGGATGTAG TATTGAAAGA TAATGTGTGG GTGGGTCACC
TACTTTCTGG ATATTCAGTG CCAATGGAAG ATCCAAAGCA GTCAAAAGGA GAAAAAGATG TGGAGATTGG TGGAACATGG
AGAGAGTCTA TAAAGGCTGC ATATGAGGCC ACTAAGTCTG CCTTTCCTGG TGGGGAAATT CTTGCACACC TAGACAACAA
GAGTTTCAAG GGCTGGCAGA GGAATGCTAT AACAGGATTC CTTGCGGAGC AGAACATTAA AATTGGAAAA CCGAATAACT
TCTATTGA

>Vigan.01G300600.01
MLAVGKLLQL PFLSLVNHGL RSSKPISIRC RINTSYSSRI TPNAFSQHKH KHKHLSDKVM VALLVATSSD PASINPANAL
LAMPGWQPGP HFQDDMKSFV NEGVRVLLHA KSIVEEDDLD RRWEEVTGEA VNEVIFFSKH TAVSNKPALT VHPIGVPHLR
EGDVPPQGGR PGWAALPNPR MGPWLRLLKN MAQAHNLVPE FEITLEATHH GPLTNKPTMF LEIGSTEDYW KRQDAAQVMA
QLVWEGLGLG GGTDVGNWSR EKDNKKILLG IGGGHYAPRH MDVVLKDNVW VGHLLSGYSV PMEDPKQSKG EKDVEIGGTW
RESIKAAYEA TKSAFPGGEI LAHLDNKSFK GWQRNAITGF LAEQNIKIGK PNNFY*