VIGGS:GBrowse

Vigan.01G303000.01

Basic Information:

Name:	Vigan.01G303000.01 Multiple alignment Variant Information
Position:	Chr01:42957447..42959278 (+ strand)
Length:	1832

Functional Information:

Description:	Similar to Uncharacterized protein. [D4P3K4, Glycine max]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:2827.01,597.50,66.47,81.58,75.27,258.71,69.08,49.39

Automatic updates:

Name:	NM_001250405 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100305832 (LOC100305832), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001253164 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glycine and proline rich protein 3 (GPRP3), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:42957447..42958005 (+ strand)
Length:	559
Type:	five_prime_UTR

Position:	Chr01:42958006..42958303 (+ strand)
Length:	298
Type:	CDS

Position:	Chr01:42958944..42959230 (+ strand)
Length:	287
Type:	CDS

Position:	Chr01:42959231..42959278 (+ strand)
Length:	48
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G303000.01
GTTATTTTCT TAAGATCTAA GGCAGGCTCC AAGTTTGAAG AAGAAAAAAT GAAAAATATC TGCGAAGCAA CCGAGAAGAT
AAAAACATAA TACCTTGAGC ATTTAGGGTC TTCCACGTGG CATTCCGCAC TGATGACAAT ATCCCTGTTA ACGACGCGTG
AGAAAACGTT ACGCGTTTTT CGGTTCCCCT TTGGCTAAGC ATTCGATTGT CAATACAAAA GGCACTACTA GTACAAGATC
CCCAATTTCT CACATTTTTC ATCCATTTCC GTAGATATTT CTCAACTACT GCATCGTATT CTGCAAATTC AAAGAGGTGA
GTTTCCTAAT TGTTCACAAT CATCAATTTT CAATTCTGAA ATCCTTGAAT TATGTTAAGG TGATGATATG TAGTCCTCTA
CTTCTCAGTG TTTTCATGTT TGATCACTTC AATCACTGAT GCTGACCAAC ACAATTTTCA TCATTGATAT TCATCCAAGT
TTTTGAAACT TTAGTGCTGG GTGGTTTGGA TTGGAGATTC CGATTTTGTG TTTCTTTGAT TTGACCTGAC TTTGTTGGCA
TGATTTCTAA TCATCATCAT CATCAGGGTC TTGGATTCTC AAAGATGGGA GGTGGCAAGG ACAAGCATGA TGAATCTGAC
AAAGGAATTT TTTCAAACCT TGTTCATGGG GTAGCTAATG CATCACATGG TGGACATGGA TACCCACCAG GGGCTTACCC
ACCCCCACCT GGGGCATACC CTCCACATCA AGGGTACCCT CCACAACAAG GCTATCCTCC AGCAGGGTAC CCTCCTGGTG
CCTACCCTCC TGCTGGTTAC CCACCAGCTG GTTATCCTGC TTCGTCACAT GCTCCAGGGC AGCATGGGCA CGGGCATGGC
GGTATGGGAG CAATGCTTGC TGGGGGTGTT GCCGCTGCTG GTGCTGCCTA CGGTGCTCAC CATGTCTCTC ATGGTTCTCA
TGGCTCTCAT GGTCACTATG CACATGGTGC TCACATGCCC CACGGGAAGT TCAAGCAGCA TGGACATGGC AAGTTCAAGC
AGCATGGACA TGGCAAGTTC AAGCATGGAA AACATGGTAA GTTCAAGCAT GGAAAGCATG GAAAGTTTGG AAAGCATGGT
GGTGGGTTCA AGAAGTGGAA GTGAGGATTG TATATGCTAA ACCAGGACTC TAGAATGCTG CTCTGTGTAG AG

[show][hide][copy]CDS

>Vigan.01G303000.01
ATGATTTCTA ATCATCATCA TCATCAGGGT CTTGGATTCT CAAAGATGGG AGGTGGCAAG GACAAGCATG ATGAATCTGA
CAAAGGAATT TTTTCAAACC TTGTTCATGG GGTAGCTAAT GCATCACATG GTGGACATGG ATACCCACCA GGGGCTTACC
CACCCCCACC TGGGGCATAC CCTCCACATC AAGGGTACCC TCCACAACAA GGCTATCCTC CAGCAGGGTA CCCTCCTGGT
GCCTACCCTC CTGCTGGTTA CCCACCAGCT GGTTATCCTG CTTCGTCACA TGCTCCAGGG CAGCATGGGC ACGGGCATGG
CGGTATGGGA GCAATGCTTG CTGGGGGTGT TGCCGCTGCT GGTGCTGCCT ACGGTGCTCA CCATGTCTCT CATGGTTCTC
ATGGCTCTCA TGGTCACTAT GCACATGGTG CTCACATGCC CCACGGGAAG TTCAAGCAGC ATGGACATGG CAAGTTCAAG
CAGCATGGAC ATGGCAAGTT CAAGCATGGA AAACATGGTA AGTTCAAGCA TGGAAAGCAT GGAAAGTTTG GAAAGCATGG
TGGTGGGTTC AAGAAGTGGA AGTGA

[show][hide][copy]PROTEIN

>Vigan.01G303000.01
MISNHHHHQG LGFSKMGGGK DKHDESDKGI FSNLVHGVAN ASHGGHGYPP GAYPPPPGAY PPHQGYPPQQ GYPPAGYPPG
AYPPAGYPPA GYPASSHAPG QHGHGHGGMG AMLAGGVAAA GAAYGAHHVS HGSHGSHGHY AHGAHMPHGK FKQHGHGKFK
QHGHGKFKHG KHGKFKHGKH GKFGKHGGGF KKWK*