GBrowse Details

Vigan.01G308100.01

Basic Information:
Name: Vigan.01G308100.01
Multiple alignment
Variant Information
Position: Chr01:43661864..43664949 (- strand)
Length: 3086
Functional Information:
Description: Similar to uncharacterized LOC101208147. [XP_004170368.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:740.43,228.27,48.59,51.21,238.37,72.77,63.46,50.21
Arabidopsis thaliana homolog: AT5G11680.1
Automatic updates:
Name: NM_001250601 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500660 (LOC100500660), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:43661864..43662094 (- strand)
Length: 231
Type: three_prime_UTR
Position: Chr01:43662095..43662203 (- strand)
Length: 109
Type: CDS
Position: Chr01:43662318..43662529 (- strand)
Length: 212
Type: CDS
Position: Chr01:43662624..43662695 (- strand)
Length: 72
Type: CDS
Position: Chr01:43664148..43664259 (- strand)
Length: 112
Type: CDS
Position: Chr01:43664618..43664733 (- strand)
Length: 116
Type: CDS
Position: Chr01:43664734..43664949 (- strand)
Length: 216
Type: five_prime_UTR


>Vigan.01G308100.01
CTTATCTACC TTATCATTTA AGTTTTGTAT TTTATTTTTA AAATATTACT GAAAATAAAA TGAATAAATA ATTTACATAT
TGTATATAAA GAACATCCAG AGGGCACAGG TAAAATCTGG AAAGACCCGC TTGCAGGTTC ATCAATTATA GAGAAACGAA
GGGGAAAGAG AGGGAGAGAT AATTGAAGAT TGAAACTTGG ATCTGTGAGA GAGAAGATGG CTTTGAATCC TCAACTCTTT
CCTAATGGAA TGCCCGTTCC TTTCGTCAAC GAGATGTTTG TGCTGGCCAG AGACGGTGTC GAATTCGATA TCGATAAGAT
TCCTGCCTCT GGAAGTCATG GGGGTCATGT CAAAACCAAA GGAATCGTCT ATTTGTCAAA TATTCGGATG GTCTTCGTTG
CTAAAAGTCC AGATGGGCAT TTTACAGCTT TTGATATGCC TTTGCTTTAC GTCCATGGAG AAAAATTTAA CCAGCCAATA
TTTCACTGCA ACAATCTTTC GGGACATGTT GAGCCTGTTG TCCCTAATGA CCAACACAGA GCACTTTACT CCACACACTC
ATTTAAGATC ATATTCAAAG AGGGTGGATG TGGAACCTTC ATTCCCCTTT TCTTCAATTT GATTGCTTCA GTGAGGCAGT
ATAATCAACA CTACAATATG CAGGCACAAT CTTATGTGGA TCCTTTGCAG GCAGCTCAGA CTCCTGTTGA TGAGATGATG
AGACATGCGT ATGTTGATCC TAATGATCCG ACGAAAATAT TTCTGCAACA ACCCAATTCT GATTCTCAGC TTAGGCGTCG
AACATATCAG CCACAGGCAG ATGGGGGCCA TGTCTGAGTC TCAAGTTACA CTGCCATCAC TCTTCATCGT ACTGTGTTTA
TATGAGCACT GTGTATTAAT ATCAAAAATA AAATAAAAAT CATATGACAG ACTAAGTGTG TGCTTGGATG TAAAATTTTA
TAGAATTAAT CTTAGATCAA CGTGATTTTA TACAATTGAT TATAGCTCGA ATTGATTTGA GGTGTCATGA TTTTTATTTG
GATAATAGAT ACTATAAGTG ATTTTCAG

>Vigan.01G308100.01
ATGGCTTTGA ATCCTCAACT CTTTCCTAAT GGAATGCCCG TTCCTTTCGT CAACGAGATG TTTGTGCTGG CCAGAGACGG
TGTCGAATTC GATATCGATA AGATTCCTGC CTCTGGAAGT CATGGGGGTC ATGTCAAAAC CAAAGGAATC GTCTATTTGT
CAAATATTCG GATGGTCTTC GTTGCTAAAA GTCCAGATGG GCATTTTACA GCTTTTGATA TGCCTTTGCT TTACGTCCAT
GGAGAAAAAT TTAACCAGCC AATATTTCAC TGCAACAATC TTTCGGGACA TGTTGAGCCT GTTGTCCCTA ATGACCAACA
CAGAGCACTT TACTCCACAC ACTCATTTAA GATCATATTC AAAGAGGGTG GATGTGGAAC CTTCATTCCC CTTTTCTTCA
ATTTGATTGC TTCAGTGAGG CAGTATAATC AACACTACAA TATGCAGGCA CAATCTTATG TGGATCCTTT GCAGGCAGCT
CAGACTCCTG TTGATGAGAT GATGAGACAT GCGTATGTTG ATCCTAATGA TCCGACGAAA ATATTTCTGC AACAACCCAA
TTCTGATTCT CAGCTTAGGC GTCGAACATA TCAGCCACAG GCAGATGGGG GCCATGTCTG A

>Vigan.01G308100.01
MALNPQLFPN GMPVPFVNEM FVLARDGVEF DIDKIPASGS HGGHVKTKGI VYLSNIRMVF VAKSPDGHFT AFDMPLLYVH
GEKFNQPIFH CNNLSGHVEP VVPNDQHRAL YSTHSFKIIF KEGGCGTFIP LFFNLIASVR QYNQHYNMQA QSYVDPLQAA
QTPVDEMMRH AYVDPNDPTK IFLQQPNSDS QLRRRTYQPQ ADGGHV*