VIGGS:GBrowse

Vigan.01G316500.01

Basic Information:

Name:	Vigan.01G316500.01 Multiple alignment Variant Information
Position:	Chr01:44583602..44585039 (+ strand)
Length:	1438

Functional Information:

Description:	Similar to Uncharacterized protein. [Q9SDY6, Glycine max]
GO:	Biological Process: carbohydrate metabolic process (GO:0005975)
	Biological Process: chitin catabolic process (GO:0006032)
	Biological Process: cell wall macromolecule catabolic process (GO:0016998)
	Molecular Function: chitinase activity (GO:0004568)
	Molecular Function: chitin binding (GO:0008061)
InterPro:	Glycoside hydrolase, family 19, catalytic (IPR000726)
	Chitin-binding, type 1 (IPR001002)
	Glycoside hydrolase, family 19 (IPR016283)
	Chitin-binding, type 1, conserved site (IPR018371)
	Lysozyme-like domain (IPR023346)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.27,0.20,54.99,34.46,21.14,29.06,0.16,5.80

Automatic updates:

Name:	NM_001251632 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max chitinase class I (CHIA1), mRNA.
PubMed ID:	25023875 NCBI(pubmed)
PubMed ID:	11709578 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:44583602..44583690 (+ strand)
Length:	89
Type:	five_prime_UTR

Position:	Chr01:44583691..44584147 (+ strand)
Length:	457
Type:	CDS

Position:	Chr01:44584249..44584396 (+ strand)
Length:	148
Type:	CDS

Position:	Chr01:44584504..44584873 (+ strand)
Length:	370
Type:	CDS

Position:	Chr01:44584874..44585039 (+ strand)
Length:	166
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G316500.01
GAAAAAACAA TCAGTCTCAT CAAAGCTCGT TTATAAATAT CTTCATCATT CTAGCTCAAC AGATCATACA AACCTTTTCT
CTAACAAAAA TGGGTACCAT GAAACTCTGT TCTTTGATGC TATGCTTGTT GCTAGCATTC GTGCTTGGTG CCACAGCAGA
ACAGTGTGGT AAACAAGCTG GTGGAGCAGT GTGCCCAAAT GGGTTATGTT GCAGCAAATT TGGATGGTGT GGTGACACAG
ATTCCTATTG TGGAGAAGGT TGCCAGAGTC AGTGTAAATC TGGCCCCAAA CCTACACCTA CACCTTCAAC CCCAACTCCA
ACACCTAGCA CCGGTGGTGA TATCACCAGA CTCATTAGCT CTTCTCTCTT CGATCAAATG CTTAAATACA GAAACGATGG
ACGCTGCGCT GGGCGCGGCT TCTACACTTA TAACGCTTTC ATTTCTGCAG CTCGCTCTTT CAGTGGCTTT GGCACAACCG
GTGATGACAA CACTCGCAAG AAGGAGATTG CTGCTTTCTT GGCCCAAACT TCTCACGAAA CCACAGGAGG GTGGGGGAGT
GCACCAGATG GTCCATACGC GTGGGGGTAC TGTTTTATCA ATGAACAAAA CCAGGCAGTT TATTGTGACG GTGGAGGATG
GCCATGTGCT GCTGGTAAAA AATATTATGG ACGAGGACCA ATCCAACTCA CACACAACTA CAACTATGGA AAAGCGGGTA
AAGCACTAAA TCTAGATTTG ACAAACAATC CGGATCTAGT GGCCACAGAT GCAACTGTGT CTTTCAAAAC AGCCCTCTGG
TTTTGGATGA CTGCACAAGA TAACAAGCCA TCAAGCCACG ATGTGATCAC TGGAAGATGG ACACCATCTA GTACAGACAC
TTCAGCAGGT CGGGTTCCCG GGTTCGGTGT GATCACGAAT ATAATCAATG GTGGGATTGA ATGCGGGCAC GGGCAGGATG
ATCGGGTCCA AGATCGGATC GGGTTCTACC AAAAGTACTG TCAACTGATG GGAATAAACC CCGGTGGAAA CTTAGATTGT
AACAGTCAAA GGCCATTTGC TTAAGCAAAT GATTTATATG GAGAGTATGT TGCATGTAAT AATGGACTTG GAATGGTCTA
TATGGAATGG GAAGCTTATT GTTAAATAAG TTCCCATTAT CTTATCTTGA TTAAATAAAA ATGTTTAACT TTACCTATGA
TAATAACTCA CAGAATCCCT TATATTATAA

[show][hide][copy]CDS

>Vigan.01G316500.01
ATGGGTACCA TGAAACTCTG TTCTTTGATG CTATGCTTGT TGCTAGCATT CGTGCTTGGT GCCACAGCAG AACAGTGTGG
TAAACAAGCT GGTGGAGCAG TGTGCCCAAA TGGGTTATGT TGCAGCAAAT TTGGATGGTG TGGTGACACA GATTCCTATT
GTGGAGAAGG TTGCCAGAGT CAGTGTAAAT CTGGCCCCAA ACCTACACCT ACACCTTCAA CCCCAACTCC AACACCTAGC
ACCGGTGGTG ATATCACCAG ACTCATTAGC TCTTCTCTCT TCGATCAAAT GCTTAAATAC AGAAACGATG GACGCTGCGC
TGGGCGCGGC TTCTACACTT ATAACGCTTT CATTTCTGCA GCTCGCTCTT TCAGTGGCTT TGGCACAACC GGTGATGACA
ACACTCGCAA GAAGGAGATT GCTGCTTTCT TGGCCCAAAC TTCTCACGAA ACCACAGGAG GGTGGGGGAG TGCACCAGAT
GGTCCATACG CGTGGGGGTA CTGTTTTATC AATGAACAAA ACCAGGCAGT TTATTGTGAC GGTGGAGGAT GGCCATGTGC
TGCTGGTAAA AAATATTATG GACGAGGACC AATCCAACTC ACACACAACT ACAACTATGG AAAAGCGGGT AAAGCACTAA
ATCTAGATTT GACAAACAAT CCGGATCTAG TGGCCACAGA TGCAACTGTG TCTTTCAAAA CAGCCCTCTG GTTTTGGATG
ACTGCACAAG ATAACAAGCC ATCAAGCCAC GATGTGATCA CTGGAAGATG GACACCATCT AGTACAGACA CTTCAGCAGG
TCGGGTTCCC GGGTTCGGTG TGATCACGAA TATAATCAAT GGTGGGATTG AATGCGGGCA CGGGCAGGAT GATCGGGTCC
AAGATCGGAT CGGGTTCTAC CAAAAGTACT GTCAACTGAT GGGAATAAAC CCCGGTGGAA ACTTAGATTG TAACAGTCAA
AGGCCATTTG CTTAA

[show][hide][copy]PROTEIN

>Vigan.01G316500.01
MGTMKLCSLM LCLLLAFVLG ATAEQCGKQA GGAVCPNGLC CSKFGWCGDT DSYCGEGCQS QCKSGPKPTP TPSTPTPTPS
TGGDITRLIS SSLFDQMLKY RNDGRCAGRG FYTYNAFISA ARSFSGFGTT GDDNTRKKEI AAFLAQTSHE TTGGWGSAPD
GPYAWGYCFI NEQNQAVYCD GGGWPCAAGK KYYGRGPIQL THNYNYGKAG KALNLDLTNN PDLVATDATV SFKTALWFWM
TAQDNKPSSH DVITGRWTPS STDTSAGRVP GFGVITNIIN GGIECGHGQD DRVQDRIGFY QKYCQLMGIN PGGNLDCNSQ
RPFA*