GBrowse Details

Vigan.01G320300.01

Basic Information:
Name: Vigan.01G320300.01
Multiple alignment
Variant Information
Position: Chr01:44959820..44961566 (- strand)
Length: 1747
Functional Information:
Description: Similar to Uncharacterized protein. [C6SZH2, Glycine max]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
InterPro: SKP1 component (IPR001232)
BTB/POZ fold (IPR011333)
SKP1 component, dimerisation (IPR016072)
SKP1 component, POZ domain (IPR016073)
E3 ubiquitin ligase, SCF complex, Skp subunit (IPR016897)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:521.01,245.64,185.82,263.28,253.93,331.95,185.35,198.44
Arabidopsis thaliana homolog: AT1G75950.1
Automatic updates:
Name: NM_001248420 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306458 (LOC100306458), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254123 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SKP1-like protein 1A-like (LOC100798104), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:44959820..44960163 (- strand)
Length: 344
Type: three_prime_UTR
Position: Chr01:44960164..44960337 (- strand)
Length: 174
Type: CDS
Position: Chr01:44961208..44961501 (- strand)
Length: 294
Type: CDS
Position: Chr01:44961502..44961566 (- strand)
Length: 65
Type: five_prime_UTR


>Vigan.01G320300.01
GTTTGCTTTA GAAATAGAAT CGCACGGAAA AGAGAGAAAA AGGGATTAGG GTTAGGGATT TGTATATGGC ATCAACAAAG
AAGATCACGC TGAAGAGTTC GGACGGTGAA GCGTTCGAAG TGGATGAGAT TGTGGCTCTG GAGTCGCAGA CGATAAAGCA
TATGATAGAG GATGATTGTG CCGACAGCGG AATTCCTCTT CCCAATGTCA CAAGCAAGAT CCTTGCAAAG GTAATCGAGT
ACTGCAAGAA GCACGTTGAG GCCAATAGTG CTGATGAAAA GCCTACTGAG GATGAGCTCA AGGCATGGGA TGCTGATTTC
GTCAAGGTTG ATCAGGCCAC GCTCTTCGAT CTCATTCTGG CTGCGAATTA CCTGAATATC AAGAACCTTT TGGACCTTAC
ATGCCAGACT GTAGCTGACA TGATAAAGGG GAAGACTCCT GAGGAAATTC GCAAGACTTT TAACATTAAG AATGACTTCA
CCCCTGAGGA AGAAGAAGAA GTTCGTAGGG AAAACCAATG GGCGTTTGAA TGAATTATTT TGAAGCGCCA ATGAAGACAG
TGGATGGGAT TAAGGGATAG TTACTAGTTA TTCTGTTACT GTTTTGTTTA TGTTTTATAT GTTGGCGTAA AAGACTTTTT
CTTTGTTAAA CCTTGTGGGC AATCTTGAAA TTTGTAAGTA ATAGTTGAAT TTGGTAATGC TTTTGAGTCT CTAGTATATG
AAGTTTGATC CATTGTCAAA CTTTGTGTGC CTCTTAATTG TTTTAATCTA TGTTTACTAA ATAATAGGGT TCCTTCTCAT
GTCTTGTTCG TATGATCGAT GCTATGATTT TTTTTATTCC CGAAACGTTA GAATGTTGAA CTGAAAATTG ATTCCCT

>Vigan.01G320300.01
ATGGCATCAA CAAAGAAGAT CACGCTGAAG AGTTCGGACG GTGAAGCGTT CGAAGTGGAT GAGATTGTGG CTCTGGAGTC
GCAGACGATA AAGCATATGA TAGAGGATGA TTGTGCCGAC AGCGGAATTC CTCTTCCCAA TGTCACAAGC AAGATCCTTG
CAAAGGTAAT CGAGTACTGC AAGAAGCACG TTGAGGCCAA TAGTGCTGAT GAAAAGCCTA CTGAGGATGA GCTCAAGGCA
TGGGATGCTG ATTTCGTCAA GGTTGATCAG GCCACGCTCT TCGATCTCAT TCTGGCTGCG AATTACCTGA ATATCAAGAA
CCTTTTGGAC CTTACATGCC AGACTGTAGC TGACATGATA AAGGGGAAGA CTCCTGAGGA AATTCGCAAG ACTTTTAACA
TTAAGAATGA CTTCACCCCT GAGGAAGAAG AAGAAGTTCG TAGGGAAAAC CAATGGGCGT TTGAATGA

>Vigan.01G320300.01
MASTKKITLK SSDGEAFEVD EIVALESQTI KHMIEDDCAD SGIPLPNVTS KILAKVIEYC KKHVEANSAD EKPTEDELKA
WDADFVKVDQ ATLFDLILAA NYLNIKNLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE*