VIGGS:GBrowse

Vigan.01G321300.01

Basic Information:

Name:	Vigan.01G321300.01 Multiple alignment Variant Information
Position:	Chr01:45044495..45047920 (- strand)
Length:	3426

Functional Information:

Description:	Similar to Proteasome subunit alpha type. [V7CFY6, Phaseolus vulgaris]
GO:	Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
	Biological Process: proteolysis involved in cellular protein catabolic process (GO:0051603)
	Cellular Component: proteasome core complex (GO:0005839)
	Cellular Component: proteasome core complex, alpha-subunit complex (GO:0019773)
	Molecular Function: endopeptidase activity (GO:0004175)
	Molecular Function: threonine-type endopeptidase activity (GO:0004298)
InterPro:	Proteasome alpha-subunit, N-terminal domain (IPR000426)
	Proteasome, subunit alpha/beta (IPR001353)
	Proteasome A-type subunit (IPR023332)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:66.88,54.60,84.77,58.24,135.11,175.13,45.62,65.84
Arabidopsis thaliana homolog:	AT5G66140.1

Automatic updates:

Name:	NM_001278992 NCBI(nuccore)
Organism:	Cicer arietinum
Description:	Cicer arietinum proteasome subunit alpha type-7-like (PAD1), mRNA.
PubMed ID:	10739099 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:45044495..45045017 (- strand)
Length:	523
Type:	three_prime_UTR

Position:	Chr01:45045018..45045179 (- strand)
Length:	162
Type:	CDS

Position:	Chr01:45047097..45047511 (- strand)
Length:	415
Type:	CDS

Position:	Chr01:45047641..45047813 (- strand)
Length:	173
Type:	CDS

Position:	Chr01:45047814..45047920 (- strand)
Length:	107
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G321300.01
CTTTACTCTC TTCACCGAAG CAAAAAGCTT GAATAGAGAG GCAAGGAGAG AGCTAGCAAT CCCAACTCAG AAGTAAAACT
TAGTAGCAAA CACAAAAGCA CGGCACAATG GCCAGGTACG ATCGAGCAAT CACCGTGTTC TCCCCCGACG GTCACCTCTT
CCAGGTCGAG TATGCCCTCG AAGCCGTCCG CAAAGGTAAC GCCGCCGTCG GCGTCCGAGG CACAGACAAC GTCGTCCTCG
GCGTCGAGAA GAAATCCACC GCCAAACTCC AAGACTCCAG GACTGTAAGG AAGATTGTGA ATCTCGACGA TCACATTGCG
CTTGCCTGCG CGGGGCTGAA GGCCGACGCA CGTGTGCTCA TAAACCGGGC ACGTGTGGAG TGTCAGAGTC ACAGGCTCAC
CGTCGAGGAT CCCGTTACTG TTGAGTATAT CACCCGTTAC ATTGCGGGGC TTCAGCAGAA GTACACGCAG AGTGGTGGTG
TGCGACCCTT TGGGCTTTCC ACCCTCATTG TTGGGTTTGA TCCCTACACT GGCGCCCCCT CACTGTACCA GACGGACCCT
TCTGGCACGT TTTCCGCGTG GAAGGCCAAC GCCACCGGCC GAAACTCGAA TTCGATTCGG GAGTTTCTGG AGAAGAATTT
CAAGGAGACC TCTGGGCAGG AGACTGTGAA ATTGGCTATT CGTGCATTGC TTGAAGTTGT TGAGAGTGGA GGGAAAAATA
TAGAAGTTGC TGTGATGACC AAGGAGCATG GTCTGCGTCA ACTGGAGGAA GCTGAAATTG ATGCCATCGT TGCTGAGATC
GAAGCAGAGA AAGCAGCTGC TGAGGCTGCG AAGAAAGCCC CTCCGAAGGA GACATGATTT TCTGTTTAGT GTGTTCCGCA
GTGTTCTTGC TAGGTTGTGG CTGTACTCGC TGGAGCTAAA ATTGATGGCA TTGTGTCTGA GATTGAAACA GAGAAAACGG
TTGTTGAGGC TGCAAAGAAT ACCATTTCTA GGGAGAAGAC ATGATTTATG TTACTTTTGT TTAGCACTTG TGGTCTCGAT
AGATGTTGGC CTAACTTAAA ATTGAATTCT TTGTTGTTTT TTGGTACTGC CATATGACAT AGTATTGGTC AAATTAATTG
CATGCCCTTG TTATTCAAGT TCAACTTGAG TCGGGTGATA CTCCATGATC CACAACATTT CATATGCAAG AACTCGTGCT
TTATACTGGT AAATACGACA ATATTTAGGA AATATGTGTC CATTGTGTAG AAAAAAGAGA GAGTATATTT CCATCTCTAT
AAGAAAATCT AATGACGTGA AATTGAAATA ATGGTGTTAT TAGATTGTGG ATAAATCATG TGAACTGCTA TATAATAAAA
TGTTGTAATT TCGTGTTTGA

[show][hide][copy]CDS

>Vigan.01G321300.01
ATGGCCAGGT ACGATCGAGC AATCACCGTG TTCTCCCCCG ACGGTCACCT CTTCCAGGTC GAGTATGCCC TCGAAGCCGT
CCGCAAAGGT AACGCCGCCG TCGGCGTCCG AGGCACAGAC AACGTCGTCC TCGGCGTCGA GAAGAAATCC ACCGCCAAAC
TCCAAGACTC CAGGACTGTA AGGAAGATTG TGAATCTCGA CGATCACATT GCGCTTGCCT GCGCGGGGCT GAAGGCCGAC
GCACGTGTGC TCATAAACCG GGCACGTGTG GAGTGTCAGA GTCACAGGCT CACCGTCGAG GATCCCGTTA CTGTTGAGTA
TATCACCCGT TACATTGCGG GGCTTCAGCA GAAGTACACG CAGAGTGGTG GTGTGCGACC CTTTGGGCTT TCCACCCTCA
TTGTTGGGTT TGATCCCTAC ACTGGCGCCC CCTCACTGTA CCAGACGGAC CCTTCTGGCA CGTTTTCCGC GTGGAAGGCC
AACGCCACCG GCCGAAACTC GAATTCGATT CGGGAGTTTC TGGAGAAGAA TTTCAAGGAG ACCTCTGGGC AGGAGACTGT
GAAATTGGCT ATTCGTGCAT TGCTTGAAGT TGTTGAGAGT GGAGGGAAAA ATATAGAAGT TGCTGTGATG ACCAAGGAGC
ATGGTCTGCG TCAACTGGAG GAAGCTGAAA TTGATGCCAT CGTTGCTGAG ATCGAAGCAG AGAAAGCAGC TGCTGAGGCT
GCGAAGAAAG CCCCTCCGAA GGAGACATGA

[show][hide][copy]PROTEIN

>Vigan.01G321300.01
MARYDRAITV FSPDGHLFQV EYALEAVRKG NAAVGVRGTD NVVLGVEKKS TAKLQDSRTV RKIVNLDDHI ALACAGLKAD
ARVLINRARV ECQSHRLTVE DPVTVEYITR YIAGLQQKYT QSGGVRPFGL STLIVGFDPY TGAPSLYQTD PSGTFSAWKA
NATGRNSNSI REFLEKNFKE TSGQETVKLA IRALLEVVES GGKNIEVAVM TKEHGLRQLE EAEIDAIVAE IEAEKAAAEA
AKKAPPKET*