GBrowse Details

Vigan.01G321900.01

Basic Information:
Name: Vigan.01G321900.01
Multiple alignment
Variant Information
Position: Chr01:45098190..45102355 (+ strand)
Length: 4166
Functional Information:
Description: Similar to multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b-like. [XP_004509368.1, Cicer arietinum]
InterPro: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (IPR001678)
RNA (C5-cytosine) methyltransferase (IPR023267)
RNA (C5-cytosine) methyltransferase, subfamily 9 (IPR023269)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.43,20.96,5.30,4.28,11.58,7.25,5.63,5.76
Arabidopsis thaliana homolog: AT5G66180.1
Automatic updates:
Name: NM_001255738 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788419 (LOC100788419), mRNA.
PubMed ID: 28294342 NCBI(pubmed)
25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:45098190..45098236 (+ strand)
Length: 47
Type: five_prime_UTR
Position: Chr01:45098237..45098355 (+ strand)
Length: 119
Type: CDS
Position: Chr01:45098443..45098587 (+ strand)
Length: 145
Type: CDS
Position: Chr01:45098709..45098799 (+ strand)
Length: 91
Type: CDS
Position: Chr01:45099298..45099495 (+ strand)
Length: 198
Type: CDS
Position: Chr01:45099627..45099856 (+ strand)
Length: 230
Type: CDS
Position: Chr01:45099942..45100073 (+ strand)
Length: 132
Type: CDS
Position: Chr01:45100905..45100972 (+ strand)
Length: 68
Type: CDS
Position: Chr01:45101077..45101138 (+ strand)
Length: 62
Type: CDS
Position: Chr01:45101928..45102070 (+ strand)
Length: 143
Type: CDS
Position: Chr01:45102071..45102355 (+ strand)
Length: 285
Type: three_prime_UTR


>Vigan.01G321900.01
CACAACCCAC CAAAATATTA TGAAGTTGAA CCCGAATTGA GCCGTGGATG GAAGGAGAAA ACGCTGCAAT GGCGCCATTG
CCAGAGGCTT TCCTTCACTT CCTGGAGGCC AATGGGCTCG ATCCTTCCCT TTACACTGCA ATCGATTCCA CCCCAAGATA
CATTCGGTTG AAACCTGGTT GTGAAGCATG CATTGAAGAG GTTGAAGCAG AGGTAAAGTG CAACCTCGAA AAAGTAGAGT
GGTTATCGGG CTTTCTCTCT CTTCCACCGC ACGTTCAAAT TGCTGGCTCT AGGGCATACC GAGAAGGAAA GATATATGGA
ATTGATGCTG CTTCTGGAGC TGCGGTTATG GCTTTAGAAG TGTCACCTGG AGATCATGTC CTAGACCTAT GTGCTGCTCC
TGGTGCTAAA CTTTGTATGA TATTGGACCT TCTTGGTGAT TCGGGCTCTG TGACAGGAGT AGATGCTGCA AGGCATCGTT
TGGCCGCTTG TAGGACAATG CTGCAAAAAT ATACGCTTGG TGATCAATGC CGGCTTTTTG TTGCTGATGG AACATCATTT
TCAGTTATTC CTACCAGATC CCGTTCTGAC TGTGAATCAT GTGAGTCTGG ATCGGAAGAA AGAGTGGATG TGTTCAAGGA
GTGGACATCT AGAAGACCAT GGAAAGAAAG GAAAAGAGCT GGCAAAAGTG GTTCTCCACA ATTGGTGTCT AGCTCTCAGC
CTCCTGAACT CATTTATTAT GGACATCGTT CTGGCGTTGT TGGTCTTACT AAAGGAGAAT TATTTAAGAC TTTATCTGAC
GATGAGATTG CAAACAAGGG CTATGACAAG GTCCTTGTAG ATGCAGAGTG CACTCATGAT GGTTCAGTTA AACATATTCA
AAAGTTTGAA CATTGGGGCT GGAGAACGCT TCAACGCCGT GTATTAGATG CTGAGAGGAC TGATGACTTA CATGCTCTTC
AGCTTAATCT TCTCACCAAT GGTTTCAGAC TGCTAAAAGT GGGAGGATCC CTTGTCTACA GCACTTGCAG CTTAACTGTT
GCTCAGAATG AAGATGTGGT GGAACAATTC TTGAAGGAAA ATAGAGCTGC AGAGCTGACA GAGATAGATG CTGCCAGAAA
TTGGCCTTGC AAGGGTGGAT GCATACCAAA AACATGGCGA TTTGACCCTT TGACATCACG AACCAGTGGC CTCTTTATAG
CGAAGTTCAC AAAATTAGTC ATTTCAGATT TTTAAGTTAG AAAATGTTCT TTTTAAATGC CTGATAACTT TAGGTGTTAA
AGGTTTCCTT ACAAATAGTT CCCCAATGGA AAGAAATATG AATTAGTAAC TATAATGTTT TGACATGCAA AAGATTTGTT
ATCAAAATCA ATTTGTTTCC ATTTTAGACA TCTTAAATAA CATACGGGTA TCGGTATACT TTCTTTGAGC ACTTAGAGTA
GTTTATCTGT AATATTAACA ACATAATGTA CTTGCACTTA GCCTACTTAT CTTGTTCATT TCATGTATAA TGGAAAATCG


>Vigan.01G321900.01
ATGGAAGGAG AAAACGCTGC AATGGCGCCA TTGCCAGAGG CTTTCCTTCA CTTCCTGGAG GCCAATGGGC TCGATCCTTC
CCTTTACACT GCAATCGATT CCACCCCAAG ATACATTCGG TTGAAACCTG GTTGTGAAGC ATGCATTGAA GAGGTTGAAG
CAGAGGTAAA GTGCAACCTC GAAAAAGTAG AGTGGTTATC GGGCTTTCTC TCTCTTCCAC CGCACGTTCA AATTGCTGGC
TCTAGGGCAT ACCGAGAAGG AAAGATATAT GGAATTGATG CTGCTTCTGG AGCTGCGGTT ATGGCTTTAG AAGTGTCACC
TGGAGATCAT GTCCTAGACC TATGTGCTGC TCCTGGTGCT AAACTTTGTA TGATATTGGA CCTTCTTGGT GATTCGGGCT
CTGTGACAGG AGTAGATGCT GCAAGGCATC GTTTGGCCGC TTGTAGGACA ATGCTGCAAA AATATACGCT TGGTGATCAA
TGCCGGCTTT TTGTTGCTGA TGGAACATCA TTTTCAGTTA TTCCTACCAG ATCCCGTTCT GACTGTGAAT CATGTGAGTC
TGGATCGGAA GAAAGAGTGG ATGTGTTCAA GGAGTGGACA TCTAGAAGAC CATGGAAAGA AAGGAAAAGA GCTGGCAAAA
GTGGTTCTCC ACAATTGGTG TCTAGCTCTC AGCCTCCTGA ACTCATTTAT TATGGACATC GTTCTGGCGT TGTTGGTCTT
ACTAAAGGAG AATTATTTAA GACTTTATCT GACGATGAGA TTGCAAACAA GGGCTATGAC AAGGTCCTTG TAGATGCAGA
GTGCACTCAT GATGGTTCAG TTAAACATAT TCAAAAGTTT GAACATTGGG GCTGGAGAAC GCTTCAACGC CGTGTATTAG
ATGCTGAGAG GACTGATGAC TTACATGCTC TTCAGCTTAA TCTTCTCACC AATGGTTTCA GACTGCTAAA AGTGGGAGGA
TCCCTTGTCT ACAGCACTTG CAGCTTAACT GTTGCTCAGA ATGAAGATGT GGTGGAACAA TTCTTGAAGG AAAATAGAGC
TGCAGAGCTG ACAGAGATAG ATGCTGCCAG AAATTGGCCT TGCAAGGGTG GATGCATACC AAAAACATGG CGATTTGACC
CTTTGACATC ACGAACCAGT GGCCTCTTTA TAGCGAAGTT CACAAAATTA GTCATTTCAG ATTTTTAA

>Vigan.01G321900.01
MEGENAAMAP LPEAFLHFLE ANGLDPSLYT AIDSTPRYIR LKPGCEACIE EVEAEVKCNL EKVEWLSGFL SLPPHVQIAG
SRAYREGKIY GIDAASGAAV MALEVSPGDH VLDLCAAPGA KLCMILDLLG DSGSVTGVDA ARHRLAACRT MLQKYTLGDQ
CRLFVADGTS FSVIPTRSRS DCESCESGSE ERVDVFKEWT SRRPWKERKR AGKSGSPQLV SSSQPPELIY YGHRSGVVGL
TKGELFKTLS DDEIANKGYD KVLVDAECTH DGSVKHIQKF EHWGWRTLQR RVLDAERTDD LHALQLNLLT NGFRLLKVGG
SLVYSTCSLT VAQNEDVVEQ FLKENRAAEL TEIDAARNWP CKGGCIPKTW RFDPLTSRTS GLFIAKFTKL VISDF*