GBrowse Details

Vigan.01G326000.01

Basic Information:
Name: Vigan.01G326000.01
Multiple alignment
Variant Information
Position: Chr01:45421165..45425695 (+ strand)
Length: 4531
Functional Information:
Description: Similar to Peptidylprolyl cis/trans isomerase. [XP_007046727.1, Theobroma cacao]
GO: Molecular Function: isomerase activity (GO:0016853)
InterPro: Peptidyl-prolyl cis-trans isomerase, PpiC-type (IPR000297)
Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site (IPR023058)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:60.30,92.43,77.75,72.74,97.67,137.89,96.59,72.16
Arabidopsis thaliana homolog: AT2G18040.1
Automatic updates:
Name: NM_001250015 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499854 (LOC100499854), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349812 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peptidyl-prolyl cis-trans isomerase (LOC100500451), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:45421165..45421593 (+ strand)
Length: 429
Type: five_prime_UTR
Position: Chr01:45421594..45421837 (+ strand)
Length: 244
Type: CDS
Position: Chr01:45425151..45425275 (+ strand)
Length: 125
Type: CDS
Position: Chr01:45425276..45425695 (+ strand)
Length: 420
Type: three_prime_UTR


>Vigan.01G326000.01
ATCTTTGTCA GTGCAATACG TGGAATAGTT CTAAATGACG TTGGAATTCC GTTGTGCATT TATATGTATT TATGAGAAAA
ACAGCATAAT CATCATTAAG CAGTAGAAAA GGCCACTTAG ATGGAGACAC GCGGCACAAA CAGTGTTAGG GCATTCAGTT
ATTCGAACAA CAAAATAGCG ACAATGAATC TGACCCGTAC GATGAATCTC AAACGGACGA CTAAGATGTC CACAACAACT
GAGTGACCCT TGTTTTAGGA CCACTCTATA AATACCGGAG CCCGAGGCTT TCACCGCGCA TAGTTGCGTT CTCTCTCTGG
AGCTAGGGTG ACCGGAGCGG CGAAGATTGA GTCGGATCGG AAGAGAAAGA AGGCGTCCAC CGCAGCGGCG GATCGGTCGG
AGAAGGAAAA CAGGAAGAAG AAGGTGAAGA TGTCGTCGTC AAAAGTTGGC GGTGAGATTA GGGCTTCGCA CATACTAATA
AAGCACGAAG GTTCTAGAAG GAAGGCGTCG TGGAAGGATC CAGAAGGACG CATAATCAAG AACACCACAA GAGAAGCTGC
GGTTTCTCAG CTCAAGGCCC TTCGCGATGA CATCGTCTCG GGCAAGGCAA CCTTCGAGGA CGTCGCGTCT CGATTCTCCG
ATTGCGGCTC CGCCAAGCGC GGCGGCGATC TTGGTCCTTT CGGTCGTGGT CAGATGCAGA AGCCTTTTGA AGAGGCAACC
CTTGCTCTTA AAGTTGGTGA ACTTAGTGAC ATTGTGGATA CCGACAGTGG AGTCCACATT ATTAAGAGGA CGAAATGATT
ACACGGAGTT ATCTCCTATT AACATCTGTA GAAGATATCC AGGATTCTTG TTGAGGTCAA GATCTGCTGA TATAAGTATA
TCAGGTTTCA GACATGGTCG CCCCATGTAT TTGGACGATA TATTGCTTTC ATGACAATTA AAATCGTGTG GTATGCTTGT
AATTTTGAAT AACATTTATA CGTTTTGGAT TCTGTTGCCA TCCGAATGTC CTTATATTAA AGGAGAAACA TGTGATCCTT
CACTAAAGCA TCCCATTTAA CTCCATAAGT CATCCAATAC CTTCCCCACC TTTGGGCAAA ATTCTTATAT CTCACAACTC
TACGTTATTA TGAAATAATG TGTCGGGCAC CCAATTAGCA ATGTGCTTAT TACTGGAAAA TACTTTTACT TGAAAAGAAG
TAAATGTTTA AACTATCA

>Vigan.01G326000.01
ATGTCGTCGT CAAAAGTTGG CGGTGAGATT AGGGCTTCGC ACATACTAAT AAAGCACGAA GGTTCTAGAA GGAAGGCGTC
GTGGAAGGAT CCAGAAGGAC GCATAATCAA GAACACCACA AGAGAAGCTG CGGTTTCTCA GCTCAAGGCC CTTCGCGATG
ACATCGTCTC GGGCAAGGCA ACCTTCGAGG ACGTCGCGTC TCGATTCTCC GATTGCGGCT CCGCCAAGCG CGGCGGCGAT
CTTGGTCCTT TCGGTCGTGG TCAGATGCAG AAGCCTTTTG AAGAGGCAAC CCTTGCTCTT AAAGTTGGTG AACTTAGTGA
CATTGTGGAT ACCGACAGTG GAGTCCACAT TATTAAGAGG ACGAAATGA

>Vigan.01G326000.01
MSSSKVGGEI RASHILIKHE GSRRKASWKD PEGRIIKNTT REAAVSQLKA LRDDIVSGKA TFEDVASRFS DCGSAKRGGD
LGPFGRGQMQ KPFEEATLAL KVGELSDIVD TDSGVHIIKR TK*