GBrowse Details

Vigan.01G326900.01

Basic Information:
Name: Vigan.01G326900.01
Multiple alignment
Variant Information
Position: Chr01:45561368..45571589 (+ strand)
Length: 10222
Functional Information:
Description: Similar to serine protease EDA2 isoform X1. [XP_003547951.1, Glycine max]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type peptidase activity (GO:0008236)
InterPro: Peptidase S28 (IPR008758)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.66,18.08,30.06,22.54,21.28,27.39,29.64,19.52
Arabidopsis thaliana homolog: AT2G18080.1, AT4G36190.1, AT4G36195.1
Automatic updates:
Name: NM_001255855 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable serine protease EDA2-like (LOC100805858), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:45561368..45561561 (+ strand)
Length: 194
Type: five_prime_UTR
Position: Chr01:45561562..45561747 (+ strand)
Length: 186
Type: CDS
Position: Chr01:45561859..45561984 (+ strand)
Length: 126
Type: CDS
Position: Chr01:45562487..45562642 (+ strand)
Length: 156
Type: CDS
Position: Chr01:45567554..45567736 (+ strand)
Length: 183
Type: CDS
Position: Chr01:45568097..45568213 (+ strand)
Length: 117
Type: CDS
Position: Chr01:45568346..45568399 (+ strand)
Length: 54
Type: CDS
Position: Chr01:45568501..45568572 (+ strand)
Length: 72
Type: CDS
Position: Chr01:45569512..45569717 (+ strand)
Length: 206
Type: CDS
Position: Chr01:45569862..45569956 (+ strand)
Length: 95
Type: CDS
Position: Chr01:45570342..45570416 (+ strand)
Length: 75
Type: CDS
Position: Chr01:45570788..45570871 (+ strand)
Length: 84
Type: CDS
Position: Chr01:45571224..45571339 (+ strand)
Length: 116
Type: CDS
Position: Chr01:45571340..45571589 (+ strand)
Length: 250
Type: three_prime_UTR


>Vigan.01G326900.01
CATTAATTAA GCGCCTTCAA CGTGTGGAGA GATTAAGTAA TATGCACCTT CTGGGCACCT TTTGGGAAGT TTATTTTTTA
TTTTGATCTC ATGTAGCACG ATGCATATAT TTTAATATTT GAGGTTGCAA GACTCTACAC ATCATTCCAT TTTCACAAGG
AAACACAAAC TGAAGCGCGA GGAAGCAGAG TATCATGGCC ATGAGACGGA AAGATTGGGT GATTGCGACA GCGTTAACGT
TGTTGCTGTT TGTTTCTTTT CCGGCGTTCA GTTACGGACT TGTTCCTCCT CGTACGCTGC TCAATAAGTT GTCGGAGGGC
AAATATCTCA CCAATCAGGA GCACTGGTTC GACCAAACCC TCGATCACTT CTCTCCCTAT GATCACCGAC AATTCCGGCA
GCGTTACTAT GAGTTCCTAG ACTATTTCCG GATCCCCGAT GGACCAATTT TTTTGTTAAT CGGTGGCGAA GGCACATCCA
ATGGCATAGC GAATGACTAT CTAGCTGTAC TGGCAAAGAA GTTTGGCGCA GCTTTGGTTT CTCTGGAACA TCGCTACTAT
GGAAAGAGTT CTCCGTTTAG TTCTTTGGAG ACAGAAAATT TGAAATATCT TTCATCCAAG CAGGCACTCT CTGATTTGGC
CACTTTTCGC CAGTATTATC AGGAGTCCTT AAATGCCAAG CTTAATAGAA CAAAAATTGA AAACCCCTGG TTCATTTTTG
GTGGCTCATA TTCTGGAGCA CTCAGTGCAT GGTTCCGTCT TAAATTTCCC CATTTAACTT GTGGAAGTCT GGCAAGTTCA
GCAGTTGTTC TTGCTGTTTA TAACTTCACA GAATTTGATC AGCAGATTGG TGAGTCAGCA GGTCCTGAAT GTAAAGCAGT
GCTGCAAGAG ATTACTCAAC TCGTTGAACA AAAGCTTGCA AGCAATGGAA GCAAAGTGAA GGCCACTTTT GATGCAGAAG
ATCTTGAAAT AGATGGAGAC TTTTTTTATT ATTTGGCTGA TGCTGCTGCT ATAGCATTTC AATATGGAAA TCCAGATAAA
GTATGCGAGC CTATAGTTAA AGCTAAGAAG GCTGGAGAGG ACTTGGTGGA TGCTTATGCC AAATATGTTA AAGAGTACTA
CTCTGGAACT TTTGGTGTTA GTGTACAGAG TTATGATCAG AAGTACTTGA AAAGAACTGA TATTAATAAA GACAGTTCAT
CTCGATTATG GTGGTTTCAA GTTTGCACTG AAGTTGCATA CTTTCAGGTG GCTCCCTCAA ATGATAGTAT TCGCTCCTCA
AAAGTTGACG CAAAATACCA CTTGGACCTT TGCGAAAATG TCTTTGGAAA GGGTACCTTT CCTGACGTTG ATGCAACTAA
CTTATACTAC GGTGGCACAA AAATTGCTGG TTCCAAAATA ATATTTACAA ACGGCTCACA AGACCCTTGG CGCCATGCGT
CCAAACAAAC TTCATCTCCT GATATGCCCT CCTACGTTGT TTCATGTTCT AACTGTGGCC ACTGTTCTGA TTATCGAGGA
TGTCCTCAAG TTCCTTTCGC CATTGAAGGT AGTGAGAAAA ACTGCACCTC TCCTGACGCA GTTCACAAAG TAAGGCAAAA
GATTTCAGAA AATATGGACT TGTGGTTATC TGAGTGCGTG GACACAGGCA GAAGTTTTAT ATGATTATTT ACATACACCA
ATTGCACGGT GCACTATAAC TTTACTTTTG GAATTTCTTT CCTTTAAAAA GATAATATTT ACACCCTTCA ATATTTTGTT
AAATGACTTT GTATAAAATG ACCAAATATA AAGCAAAATA TATGTATGCA CTGTTATGTT TATGTATTTA TCTCTCTGTT
GCATGCAATG CGAGATTTTA AACTATAAAG TTAGATTATA CTGTATGTGT AAATTTTCCT TCACAAATTG GTCG

>Vigan.01G326900.01
ATGGCCATGA GACGGAAAGA TTGGGTGATT GCGACAGCGT TAACGTTGTT GCTGTTTGTT TCTTTTCCGG CGTTCAGTTA
CGGACTTGTT CCTCCTCGTA CGCTGCTCAA TAAGTTGTCG GAGGGCAAAT ATCTCACCAA TCAGGAGCAC TGGTTCGACC
AAACCCTCGA TCACTTCTCT CCCTATGATC ACCGACAATT CCGGCAGCGT TACTATGAGT TCCTAGACTA TTTCCGGATC
CCCGATGGAC CAATTTTTTT GTTAATCGGT GGCGAAGGCA CATCCAATGG CATAGCGAAT GACTATCTAG CTGTACTGGC
AAAGAAGTTT GGCGCAGCTT TGGTTTCTCT GGAACATCGC TACTATGGAA AGAGTTCTCC GTTTAGTTCT TTGGAGACAG
AAAATTTGAA ATATCTTTCA TCCAAGCAGG CACTCTCTGA TTTGGCCACT TTTCGCCAGT ATTATCAGGA GTCCTTAAAT
GCCAAGCTTA ATAGAACAAA AATTGAAAAC CCCTGGTTCA TTTTTGGTGG CTCATATTCT GGAGCACTCA GTGCATGGTT
CCGTCTTAAA TTTCCCCATT TAACTTGTGG AAGTCTGGCA AGTTCAGCAG TTGTTCTTGC TGTTTATAAC TTCACAGAAT
TTGATCAGCA GATTGGTGAG TCAGCAGGTC CTGAATGTAA AGCAGTGCTG CAAGAGATTA CTCAACTCGT TGAACAAAAG
CTTGCAAGCA ATGGAAGCAA AGTGAAGGCC ACTTTTGATG CAGAAGATCT TGAAATAGAT GGAGACTTTT TTTATTATTT
GGCTGATGCT GCTGCTATAG CATTTCAATA TGGAAATCCA GATAAAGTAT GCGAGCCTAT AGTTAAAGCT AAGAAGGCTG
GAGAGGACTT GGTGGATGCT TATGCCAAAT ATGTTAAAGA GTACTACTCT GGAACTTTTG GTGTTAGTGT ACAGAGTTAT
GATCAGAAGT ACTTGAAAAG AACTGATATT AATAAAGACA GTTCATCTCG ATTATGGTGG TTTCAAGTTT GCACTGAAGT
TGCATACTTT CAGGTGGCTC CCTCAAATGA TAGTATTCGC TCCTCAAAAG TTGACGCAAA ATACCACTTG GACCTTTGCG
AAAATGTCTT TGGAAAGGGT ACCTTTCCTG ACGTTGATGC AACTAACTTA TACTACGGTG GCACAAAAAT TGCTGGTTCC
AAAATAATAT TTACAAACGG CTCACAAGAC CCTTGGCGCC ATGCGTCCAA ACAAACTTCA TCTCCTGATA TGCCCTCCTA
CGTTGTTTCA TGTTCTAACT GTGGCCACTG TTCTGATTAT CGAGGATGTC CTCAAGTTCC TTTCGCCATT GAAGGTAGTG
AGAAAAACTG CACCTCTCCT GACGCAGTTC ACAAAGTAAG GCAAAAGATT TCAGAAAATA TGGACTTGTG GTTATCTGAG
TGCGTGGACA CAGGCAGAAG TTTTATATGA 

>Vigan.01G326900.01
MAMRRKDWVI ATALTLLLFV SFPAFSYGLV PPRTLLNKLS EGKYLTNQEH WFDQTLDHFS PYDHRQFRQR YYEFLDYFRI
PDGPIFLLIG GEGTSNGIAN DYLAVLAKKF GAALVSLEHR YYGKSSPFSS LETENLKYLS SKQALSDLAT FRQYYQESLN
AKLNRTKIEN PWFIFGGSYS GALSAWFRLK FPHLTCGSLA SSAVVLAVYN FTEFDQQIGE SAGPECKAVL QEITQLVEQK
LASNGSKVKA TFDAEDLEID GDFFYYLADA AAIAFQYGNP DKVCEPIVKA KKAGEDLVDA YAKYVKEYYS GTFGVSVQSY
DQKYLKRTDI NKDSSSRLWW FQVCTEVAYF QVAPSNDSIR SSKVDAKYHL DLCENVFGKG TFPDVDATNL YYGGTKIAGS
KIIFTNGSQD PWRHASKQTS SPDMPSYVVS CSNCGHCSDY RGCPQVPFAI EGSEKNCTSP DAVHKVRQKI SENMDLWLSE
CVDTGRSFI*