GBrowse Details

Vigan.01G330700.01

Basic Information:
Name: Vigan.01G330700.01
Multiple alignment
Variant Information
Position: Chr01:45920716..45931879 (- strand)
Length: 11164
Functional Information:
Description: Similar to T-complex-associated testis-expressed protein 1 isoform 1. [XP_007046816.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.42,4.61,6.56,4.57,6.46,5.49,6.74,5.93
Arabidopsis thaliana homolog: AT4G36440.1
Automatic updates:
Name: NM_001253323 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100780403 (LOC100780403), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:45920716..45920985 (- strand)
Length: 270
Type: three_prime_UTR
Position: Chr01:45920986..45921123 (- strand)
Length: 138
Type: CDS
Position: Chr01:45922050..45922103 (- strand)
Length: 54
Type: CDS
Position: Chr01:45922218..45922284 (- strand)
Length: 67
Type: CDS
Position: Chr01:45922469..45922535 (- strand)
Length: 67
Type: CDS
Position: Chr01:45922979..45923071 (- strand)
Length: 93
Type: CDS
Position: Chr01:45923150..45923252 (- strand)
Length: 103
Type: CDS
Position: Chr01:45923350..45923434 (- strand)
Length: 85
Type: CDS
Position: Chr01:45923567..45923619 (- strand)
Length: 53
Type: CDS
Position: Chr01:45925131..45925224 (- strand)
Length: 94
Type: CDS
Position: Chr01:45926457..45926502 (- strand)
Length: 46
Type: CDS
Position: Chr01:45926821..45926863 (- strand)
Length: 43
Type: CDS
Position: Chr01:45928777..45928842 (- strand)
Length: 66
Type: CDS
Position: Chr01:45929438..45929512 (- strand)
Length: 75
Type: CDS
Position: Chr01:45930915..45930971 (- strand)
Length: 57
Type: CDS
Position: Chr01:45931073..45931111 (- strand)
Length: 39
Type: CDS
Position: Chr01:45931273..45931364 (- strand)
Length: 92
Type: CDS
Position: Chr01:45931443..45931479 (- strand)
Length: 37
Type: CDS
Position: Chr01:45931480..45931879 (- strand)
Length: 400
Type: five_prime_UTR


>Vigan.01G330700.01
TATCGACCCC TTGTCCCTAT CATAACAAGA TTATTGTTAT CAAATGAGTA CGAATGAAAC TAAAAATTTC AACCCACTCT
CTACGGGCAT CTTACACGGT CCAACAGGTC GAACGATTTG AATAGAAGCG AATCCAGGTG AATTTGCGAT CGTGACCAGA
ACGGAACCTT CGCCAAGGCA TCTAAGGTGT TTGCATCAAG GTCACTGAGA AAAATTCTCT GAAACGACGA GAATAAAATA
TCGACTTGCC TCAGACATTC ACAGGCAACC CGCAAAAACA CTCTGAATGC CGTTTTCTCC GTCGCTACTC ATGTCTCAGG
CTCGTCTCTT AGATGTAGAT TTTCACTGAC ACCACCTCGC ATCACCTTCC CCAAAATCCC AATCAGCAAT CACTCCAAAA
ATGCGTTGCT CGATGGCGTT CGCCATTTTA TGCCTAGGCG TGCTTTTGCA GATACCATGG ATGGCTTCAG TTTCGATGCC
GACTTCCAAC TGCTACGCTT TCGACAATTC AAGTCGCTTA GTTGATTTTA ATGGCTGGAG TGGTTACCTT TTCGAGTATG
ATCAACAGCA AGGCCCTGAC CTGATCGTAC GATTCTGCAA AGATGTGGAG AGTAGATCAC AAACGGGATA TGTTAGTTTT
GGCCGATTTG ATAAATTCAA CTACTTCGTT GCTGGTTCTG GCCAACATGA CTTTATGCAA GAGTTTTATA ATGGTGATCT
TATGGGTTGT GAACAAAGTT ATGACAAAAT GGGACGAACA GCCCAGGTTA ATATGGTATG TGGGAATTGT TCGAATGGAC
TATGTAAAGG TCGTCCTGGA TGCATATGTA ATGTCACATA TGAATCAAAT TGCAGAGTTT TAGTGGATCT TGCAATACCA
TGTGGTAAAC CAGGCCCTCA CGTATTTCAA GGCTTCACTG TTGGTTTTCA TCCAAGATCA TGGGAACTTG TTTATAATGG
CTTGACCCAA ATTGGTTTTG AGAAACCCCG CCATGATTTT AGCTTTCATA CAGGGCAAAC TCAGGTAGTC CTGTTTATGA
CTGCGGTTGC CTCACTTTCT TCCCTGGTTC AAAAGCCTAG TTTAAAGGTA CATCCAGATA ATGGCCTGGA AGTTAGATTG
TCTGGATCTG CTGACAAAGG GAAGCCTCCG ACAACTTTGT CACCCTCAAT GTTGATTGTT GATTGGAGAT GTGAGGTGGC
CCGTGATACC CCATATGAAG TTAATATCAC AATCCCTGTT GAGGGTTATG AGCCAATTCA GTTTGTGCTT ACAAAACAAT
GTGATTATAC GCAGGATCCT GGGGGAGGTC GCACACGAGG ATGGGCAATA TTTGGAGTGC TGTCCTGCAT ATTTTTTGTC
TTTTCAACAC TCTTTTGTTG TGGAGGGTTC ATTTACAAGA CGAAAGTGGA ACGGCAGCGT GGAATTGATG CTTTGCCTGG
CATGACTATC CTTTCTGCGT GCTTAGAGAC AGTTAGTGGA GTTGGGCATG GCTACTCACG CCCAGAAGAA GTCAATAGTG
CCTTTGGCAG TGAAGCCTCC TGGGAACGTC CTCCTGGTCC CTCACAAGGT ACATGGAAAC CTTCAGAAAG AAAATATGGT
GCCATTTGAA AGTGTACCGT CATTCATTTT GTTTTGTTTA CTCACAATCT GCCATCATGT TATCTACTTT TTGTGAATTT
CTTCTGCCAA ATATGTTGTT TGTATCAACT CATTACGAGG GCTTCGAAGG CCCTCTGATA TTTTTTCTTG TAAACATAAA
AATCACAGAT AGAAGAAAAG GGTAGTTATA GTATCAACCT AGTTGCTGAA TTCCATTTAA TGAATTTTAT AGAAATTTTG
ATAGGGTTCT ATTGTTTTTG TTTGATTCAT ATTTTAAAA

>Vigan.01G330700.01
ATGCGTTGCT CGATGGCGTT CGCCATTTTA TGCCTAGGCG TGCTTTTGCA GATACCATGG ATGGCTTCAG TTTCGATGCC
GACTTCCAAC TGCTACGCTT TCGACAATTC AAGTCGCTTA GTTGATTTTA ATGGCTGGAG TGGTTACCTT TTCGAGTATG
ATCAACAGCA AGGCCCTGAC CTGATCGTAC GATTCTGCAA AGATGTGGAG AGTAGATCAC AAACGGGATA TGTTAGTTTT
GGCCGATTTG ATAAATTCAA CTACTTCGTT GCTGGTTCTG GCCAACATGA CTTTATGCAA GAGTTTTATA ATGGTGATCT
TATGGGTTGT GAACAAAGTT ATGACAAAAT GGGACGAACA GCCCAGGTTA ATATGGTATG TGGGAATTGT TCGAATGGAC
TATGTAAAGG TCGTCCTGGA TGCATATGTA ATGTCACATA TGAATCAAAT TGCAGAGTTT TAGTGGATCT TGCAATACCA
TGTGGTAAAC CAGGCCCTCA CGTATTTCAA GGCTTCACTG TTGGTTTTCA TCCAAGATCA TGGGAACTTG TTTATAATGG
CTTGACCCAA ATTGGTTTTG AGAAACCCCG CCATGATTTT AGCTTTCATA CAGGGCAAAC TCAGGTAGTC CTGTTTATGA
CTGCGGTTGC CTCACTTTCT TCCCTGGTTC AAAAGCCTAG TTTAAAGGTA CATCCAGATA ATGGCCTGGA AGTTAGATTG
TCTGGATCTG CTGACAAAGG GAAGCCTCCG ACAACTTTGT CACCCTCAAT GTTGATTGTT GATTGGAGAT GTGAGGTGGC
CCGTGATACC CCATATGAAG TTAATATCAC AATCCCTGTT GAGGGTTATG AGCCAATTCA GTTTGTGCTT ACAAAACAAT
GTGATTATAC GCAGGATCCT GGGGGAGGTC GCACACGAGG ATGGGCAATA TTTGGAGTGC TGTCCTGCAT ATTTTTTGTC
TTTTCAACAC TCTTTTGTTG TGGAGGGTTC ATTTACAAGA CGAAAGTGGA ACGGCAGCGT GGAATTGATG CTTTGCCTGG
CATGACTATC CTTTCTGCGT GCTTAGAGAC AGTTAGTGGA GTTGGGCATG GCTACTCACG CCCAGAAGAA GTCAATAGTG
CCTTTGGCAG TGAAGCCTCC TGGGAACGTC CTCCTGGTCC CTCACAAGGT ACATGGAAAC CTTCAGAAAG AAAATATGGT
GCCATTTGA

>Vigan.01G330700.01
MRCSMAFAIL CLGVLLQIPW MASVSMPTSN CYAFDNSSRL VDFNGWSGYL FEYDQQQGPD LIVRFCKDVE SRSQTGYVSF
GRFDKFNYFV AGSGQHDFMQ EFYNGDLMGC EQSYDKMGRT AQVNMVCGNC SNGLCKGRPG CICNVTYESN CRVLVDLAIP
CGKPGPHVFQ GFTVGFHPRS WELVYNGLTQ IGFEKPRHDF SFHTGQTQVV LFMTAVASLS SLVQKPSLKV HPDNGLEVRL
SGSADKGKPP TTLSPSMLIV DWRCEVARDT PYEVNITIPV EGYEPIQFVL TKQCDYTQDP GGGRTRGWAI FGVLSCIFFV
FSTLFCCGGF IYKTKVERQR GIDALPGMTI LSACLETVSG VGHGYSRPEE VNSAFGSEAS WERPPGPSQG TWKPSERKYG
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