GBrowse Details

Vigan.01G332000.01

Basic Information:
Name: Vigan.01G332000.01
Multiple alignment
Variant Information
Position: Chr01:46069354..46071364 (- strand)
Length: 2011
Functional Information:
Description: Similar to Salicylic acid methyl transferase-like protein. [B5A7G5, Glycine max]
GO: Molecular Function: methyltransferase activity (GO:0008168)
InterPro: SAM dependent carboxyl methyltransferase (IPR005299)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.04,0.00,95.73,23.31,0.04,8.38,0.08,14.13
Automatic updates:
Name: NM_001250193 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max salicylic acid methyl transferase-like protein (SABATH2), mRNA.
PubMed ID: -
Status: Known Variant
Name: OL661290 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max salicylic acid methyltransferase mRNA, partial cds.
PubMed ID: 35021222 NCBI(pubmed)
Status: Known Variant
Name: OL661314 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris salicylic acid methyltransferase mRNA, complete cds.
PubMed ID: 35021222 NCBI(pubmed)
Status: Known Variant
Name: OL661315 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris salicylic acid methyltransferase mRNA, complete cds.
PubMed ID: 35021222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:46069354..46069630 (- strand)
Length: 277
Type: three_prime_UTR
Position: Chr01:46069631..46070008 (- strand)
Length: 378
Type: CDS
Position: Chr01:46070228..46070482 (- strand)
Length: 255
Type: CDS
Position: Chr01:46070590..46070994 (- strand)
Length: 405
Type: CDS
Position: Chr01:46071244..46071318 (- strand)
Length: 75
Type: CDS
Position: Chr01:46071319..46071364 (- strand)
Length: 46
Type: five_prime_UTR


>Vigan.01G332000.01
AGGAGAATAT CCCAAAACGA GCAAAGTAGA GATAAAAAAG AAAACAATGG AAGTAGCACA GGTTCTGCAC ATGAACGGGG
GTGTTGGAGA CGCAAGCTAT GCAAACAACT CTCTTGTTCA GCAAAAGGTG ATTTCTTTGA CAAAGCCAAT AAGAGAGGAA
GCCATAACTA GCCTCTATTG CAGTACACTC CCGAGAAGTT TGGCAATTGC AGATTTGGGT TGCTCTTCTG GACCAAACAC
TCTATTTGTT GCGTCTGAAC TCATCAAAAC TGTGGAGAAG CTTTGTCGGA AGCTGAAACA TAAATCTCCA GAGTACAGGG
TGTTTCTGAA TGATCTGCCT GGGAATGACT TCAACAACAT CTTTAAGTCC CTTGACAGCT TTAAAATGAA ATTGCAAACA
GAAGTGGCAG GTGGGATTGG TCCATGCTAC TTCTCTGGGG TTCCAGGATC TTTCTATGGC AGGGCTTTCC CGAATCAAAG
TTTACATTTT GTCCATTCCT CTTACAGTCT TCAATGGCTA TCTAAGGTTC CTGAGGGTGT AGACAACAAC AAGGGCAACA
TTTATTTAGG CAGAACAAGC CCATCAAATG TTGTGAGAGC TTACTATGAC CAATTTCAAA GAGATTTCAG TGTTTTTCTC
AAGTGTCGAG CAGAGGAACT AGTTCAAGGA GGTCGTATGG TTCTGACATT TTTGGGGAGA AGAAACGAGG ATCCATGTAG
CAAGGATGGT TGCTACATTT GGGAGCTTAT GGCTAATGCT CTTAATGATA TGGTTTCGCA GGGAATCATA AAGGAAGAGC
AAGTAGATAG TTTTAACATC CCACAATACA CTCCATCAGC TTCTGAAGTG AAATTGGAAG TTCTTAAAGA AGGATCGTTC
GCCATCAATC GTGTGGAAGT CTCTGAAGTG AACTGGAACG CTTTTGATGA TTGGAACGCT CTTGATTTTG AATCTGAAAG
GTCTGAATCA ATCGGTGATG GTGGATACAA CGTGGCACAG TGCATGAGGG CTGTGGCAGA ACCTATGCTG GTAAGTCACT
TTGGTGAAGA CATCATTGAA GAGGTTTTCA GCCGCTACCA GCAAATCTTG GCTGATCGAA TGTCCAAGGA AAAAACTCAG
TTCTTCAATG TCACTGTGTT ATTGAGTCGA AAAGATTAAG CAAGAAGTTT GCATTGCATC TATATATATA TATATATATA
TATATATATA TATATATATG TGTGTGTGTG TGTGTATGGT TTGCTCCTTT CTTTTCTGGC AATTATGAGT AGCAAAAATG
TTAAGCTGGA ATAGAATAAA GTTAGAATTG TGTGGTGTTT ATTAGCAACT TTTTTTTTTT AAATATTTGT AGTTCTGTGA
TAAAAACTAT TCTTGTAAGA TTATGATATG ATTAGTAGTC AATGATAGAT GCTTCAATGC TGTTATTCAC TCGCCA

>Vigan.01G332000.01
ATGGAAGTAG CACAGGTTCT GCACATGAAC GGGGGTGTTG GAGACGCAAG CTATGCAAAC AACTCTCTTG TTCAGCAAAA
GGTGATTTCT TTGACAAAGC CAATAAGAGA GGAAGCCATA ACTAGCCTCT ATTGCAGTAC ACTCCCGAGA AGTTTGGCAA
TTGCAGATTT GGGTTGCTCT TCTGGACCAA ACACTCTATT TGTTGCGTCT GAACTCATCA AAACTGTGGA GAAGCTTTGT
CGGAAGCTGA AACATAAATC TCCAGAGTAC AGGGTGTTTC TGAATGATCT GCCTGGGAAT GACTTCAACA ACATCTTTAA
GTCCCTTGAC AGCTTTAAAA TGAAATTGCA AACAGAAGTG GCAGGTGGGA TTGGTCCATG CTACTTCTCT GGGGTTCCAG
GATCTTTCTA TGGCAGGGCT TTCCCGAATC AAAGTTTACA TTTTGTCCAT TCCTCTTACA GTCTTCAATG GCTATCTAAG
GTTCCTGAGG GTGTAGACAA CAACAAGGGC AACATTTATT TAGGCAGAAC AAGCCCATCA AATGTTGTGA GAGCTTACTA
TGACCAATTT CAAAGAGATT TCAGTGTTTT TCTCAAGTGT CGAGCAGAGG AACTAGTTCA AGGAGGTCGT ATGGTTCTGA
CATTTTTGGG GAGAAGAAAC GAGGATCCAT GTAGCAAGGA TGGTTGCTAC ATTTGGGAGC TTATGGCTAA TGCTCTTAAT
GATATGGTTT CGCAGGGAAT CATAAAGGAA GAGCAAGTAG ATAGTTTTAA CATCCCACAA TACACTCCAT CAGCTTCTGA
AGTGAAATTG GAAGTTCTTA AAGAAGGATC GTTCGCCATC AATCGTGTGG AAGTCTCTGA AGTGAACTGG AACGCTTTTG
ATGATTGGAA CGCTCTTGAT TTTGAATCTG AAAGGTCTGA ATCAATCGGT GATGGTGGAT ACAACGTGGC ACAGTGCATG
AGGGCTGTGG CAGAACCTAT GCTGGTAAGT CACTTTGGTG AAGACATCAT TGAAGAGGTT TTCAGCCGCT ACCAGCAAAT
CTTGGCTGAT CGAATGTCCA AGGAAAAAAC TCAGTTCTTC AATGTCACTG TGTTATTGAG TCGAAAAGAT TAA

>Vigan.01G332000.01
MEVAQVLHMN GGVGDASYAN NSLVQQKVIS LTKPIREEAI TSLYCSTLPR SLAIADLGCS SGPNTLFVAS ELIKTVEKLC
RKLKHKSPEY RVFLNDLPGN DFNNIFKSLD SFKMKLQTEV AGGIGPCYFS GVPGSFYGRA FPNQSLHFVH SSYSLQWLSK
VPEGVDNNKG NIYLGRTSPS NVVRAYYDQF QRDFSVFLKC RAEELVQGGR MVLTFLGRRN EDPCSKDGCY IWELMANALN
DMVSQGIIKE EQVDSFNIPQ YTPSASEVKL EVLKEGSFAI NRVEVSEVNW NAFDDWNALD FESERSESIG DGGYNVAQCM
RAVAEPMLVS HFGEDIIEEV FSRYQQILAD RMSKEKTQFF NVTVLLSRKD *