VIGGS:GBrowse

Vigan.01G334600.01

Basic Information:

Name:	Vigan.01G334600.01 Multiple alignment Variant Information
Position:	Chr01:46378053..46382357 (- strand)
Length:	4305

Functional Information:

Description:	Similar to random slug protein 5-like isoform X3. [XP_004509256.1, Cicer arietinum]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: intracellular (GO:0005622)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Cellular retinaldehyde binding/alpha-tocopherol transport (IPR001071)
	CRAL-TRIO domain (IPR001251)
	CRAL/TRIO, N-terminal domain (IPR011074)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:30.29,2.37,15.16,13.48,14.33,13.46,16.52,16.16
Arabidopsis thaliana homolog:	AT4G36640.1

Automatic updates:

Name:	NM_001252826 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max CRAL-TRIO domain-containing protein C23B6.04c-like (LOC100800024), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001254706 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max sec14p-like lipid-binding domain-containing protein (LOC100782334), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:46378053..46378364 (- strand)
Length:	312
Type:	three_prime_UTR

Position:	Chr01:46378365..46378667 (- strand)
Length:	303
Type:	CDS

Position:	Chr01:46379238..46379483 (- strand)
Length:	246
Type:	CDS

Position:	Chr01:46379568..46379666 (- strand)
Length:	99
Type:	CDS

Position:	Chr01:46380694..46380870 (- strand)
Length:	177
Type:	CDS

Position:	Chr01:46381282..46381347 (- strand)
Length:	66
Type:	CDS

Position:	Chr01:46381348..46382357 (- strand)
Length:	1010
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G334600.01
TGGTGAAGTT AAGAAGAAGA CGTTAAAGAA GGGAAAGAGA AAGCGTAAGT AAGTGACACT CGTGTGAGCC AAATCACAAG
AGACATGCGC CAGAGTGTGC GAATCCACCC ATCCATCTCA CTCATTCCCC ACTCACTCAA ACGCACACAC AATAACAAAC
ACAATGCACG CCCATGCCCA CTTCCTAATT CTCTTCTCAA AAACTTCTTC AATCATATAG CATTACCCTT TCAGCTCCTT
CCATACCTTC ATTCTCACAA GGTTTTCCTT CCATTTTCAT TCTTCACTCT CTGGATCCGA TTCTCGAATA TTGCTTTATA
TTCTTTTACT GAGAATCCTT TCTCTTCTCT TTTTTTTTTT TTTTTTTTTC TGTTTTACTC TTTTCACCTC TCTCCTGTCA
CTGCTTCATC AGATTCGAGG CCTTTATATG TGTGCTTCGG TCTTCGCCTT ACTCTTATTC TGATTCGTTT TACATTTTAT
TCCTTCTCGT TTTTGTCAGT CAACGCTGCC GTTTTACGCT AGTGTGTAAA ACGGATCGGT TTGAGAAGAG AGAAAAATCA
AATTGAGGTT GAAAAGGTTG ACCTTCTTCG TGTTGGACTA GGTGAACGGA ACAGAATTGG TGTCTTTTTT CGGTTTTGTC
TTTTGTACGA ATAGATCGGT CGATTGCTTA TATTTTATGT TGTTAATTAG TTTTTTATTC GGTGAACGAA GGGGCTCCGG
CAATGTTTAT AAAGAATTGT TAGCTGTTTG GGTATGTAAC TGTGCCGTGT TTTGGTTTGG TTGTGATTAA GGTGATGTAG
GTACTTGGGA TTGAATACAG TGGTTTTTGA TTTGATTGTT ATTGAGGGGA GTTCTTCTTT ACGAGGGTTT GATTGTTGCT
GACTTCCGGT TATTGTATTC TATGTTTCAA CTTTCATGAT TTTGTGGGGT TGTTGATTTT AGGCTTGAAG AGGAAGTGTA
ATCCTGAAGT TTTCTGCTGC AGGTGGAAGC TAGTACATTT GGTGGACAAC ATGTTCCTTC TTAGAAGGCA AGGCCAAAAT
CAGCTGGAGA ATGATTCCTC AAAACAAGAT ACAAAGGTGA ATGAACTCAG GGCTGCTGTT GGGCCCCTCT CTGGTCGTCG
ACTACTGTAT TGCACAGATG CATGTCTAAG GAGATATTTA GAAGCAAGGA ATTGGAATGT TGATAAAGCA AAGAAAATGC
TGGAGGAAAC ACTCAAGTGG AGGGCAACTT ATAAGCCAGA AGAAATTCGT TGGGCTGAAG TAGCACATGA GGGTGAGACA
GGTAAAGTAT CCAGAGCTAA CTTTCGTGAT CGACTTGGGA GGACTGTGCT TATTATGAGG CCAGGAATGC AGAACACAAC
ATCAGCTGAA GATAATATCA GGCATTTAGT CTATCTATTG GAAAATGCTA TCCTAAATCT TCAAGAAGGT CAAGAACAAA
TGTCGTGGTT GATAGACTTC ACAGGATTAT CATTGAATAC AAATATTTCT GTTAAAACAG CTCGTGATAT TATTCACATT
TTACAAAATC ACTATCCAGA AAGGCTTGCT ATTGCTTTCC TGTACAATCC ACCAAGAATA TTTCAGGCTT TCTGGAAGGC
CGTGAGGTTT TTCCTGGATC CGAAGACAGT CCAGAAGGTG AAGTTTGTTT ATCCTAATAA TAAGGACAGT GTGGAACTAA
TGCAATCACT CTTCGACCTA GATAACCTTC CAAGTGAATT TGGAGGGAAA ACAAGTTTAA TGTATGACCA TGAAGAGTTC
TCACGGTTGA TGACTGAGGA TGATGTGAAA ACTGCTAAGT TCTGGGGAAT TGACCAGAAG CCTTTCAACC CTCCTAAGAA
AGGGCATGCT GGAGCAGAGG TGGCACCAGA ACCCGTGTCT GTTCAGACAG TAGGTAGTTA GTTAGTTGAG CTACTTTTAA
AACTGTAGTC ATTTATAAAC TGAAGTGACT ACATATCTGA ATCATTAATT CAGTGGCTAA TTTAAGGAGC CGAATAAGCG
GTATTTTGTA TCTTTCAACT TTTTAACCAT TTATGGCGAT AGCTGCTATA GTCCTCGACT TTTAGGTAAC CGAACTAAAA
TTCAGACTAT ATATGTCAAT TCTCCAATCC TGTGCAAAGT TAATTTCTTG TTGCTAGCTT GTCCTTGTGC CTATTCAAGC
TAATACAAAG TATAAAAAAA TCATTGATCC TAAGCAGAGA CATGGATGGC AAA

[show][hide][copy]CDS

>Vigan.01G334600.01
ATGTTCCTTC TTAGAAGGCA AGGCCAAAAT CAGCTGGAGA ATGATTCCTC AAAACAAGAT ACAAAGGTGA ATGAACTCAG
GGCTGCTGTT GGGCCCCTCT CTGGTCGTCG ACTACTGTAT TGCACAGATG CATGTCTAAG GAGATATTTA GAAGCAAGGA
ATTGGAATGT TGATAAAGCA AAGAAAATGC TGGAGGAAAC ACTCAAGTGG AGGGCAACTT ATAAGCCAGA AGAAATTCGT
TGGGCTGAAG TAGCACATGA GGGTGAGACA GGTAAAGTAT CCAGAGCTAA CTTTCGTGAT CGACTTGGGA GGACTGTGCT
TATTATGAGG CCAGGAATGC AGAACACAAC ATCAGCTGAA GATAATATCA GGCATTTAGT CTATCTATTG GAAAATGCTA
TCCTAAATCT TCAAGAAGGT CAAGAACAAA TGTCGTGGTT GATAGACTTC ACAGGATTAT CATTGAATAC AAATATTTCT
GTTAAAACAG CTCGTGATAT TATTCACATT TTACAAAATC ACTATCCAGA AAGGCTTGCT ATTGCTTTCC TGTACAATCC
ACCAAGAATA TTTCAGGCTT TCTGGAAGGC CGTGAGGTTT TTCCTGGATC CGAAGACAGT CCAGAAGGTG AAGTTTGTTT
ATCCTAATAA TAAGGACAGT GTGGAACTAA TGCAATCACT CTTCGACCTA GATAACCTTC CAAGTGAATT TGGAGGGAAA
ACAAGTTTAA TGTATGACCA TGAAGAGTTC TCACGGTTGA TGACTGAGGA TGATGTGAAA ACTGCTAAGT TCTGGGGAAT
TGACCAGAAG CCTTTCAACC CTCCTAAGAA AGGGCATGCT GGAGCAGAGG TGGCACCAGA ACCCGTGTCT GTTCAGACAG
TAGGTAGTTA G

[show][hide][copy]PROTEIN

>Vigan.01G334600.01
MFLLRRQGQN QLENDSSKQD TKVNELRAAV GPLSGRRLLY CTDACLRRYL EARNWNVDKA KKMLEETLKW RATYKPEEIR
WAEVAHEGET GKVSRANFRD RLGRTVLIMR PGMQNTTSAE DNIRHLVYLL ENAILNLQEG QEQMSWLIDF TGLSLNTNIS
VKTARDIIHI LQNHYPERLA IAFLYNPPRI FQAFWKAVRF FLDPKTVQKV KFVYPNNKDS VELMQSLFDL DNLPSEFGGK
TSLMYDHEEF SRLMTEDDVK TAKFWGIDQK PFNPPKKGHA GAEVAPEPVS VQTVGS*