GBrowse Details

Vigan.01G341500.01

Basic Information:
Name: Vigan.01G341500.01
Multiple alignment
Variant Information
Position: Chr01:47393458..47398842 (- strand)
Length: 5385
Functional Information:
Description: Similar to autophagy-related protein 101-like. [XP_004509180.1, Cicer arietinum]
InterPro: Autophagy-related protein 1010 (IPR012445)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.88,12.72,13.70,11.97,16.02,18.45,16.07,12.81
Arabidopsis thaliana homolog: AT5G66930.3
Automatic updates:
Name: NM_001255520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max autophagy-related protein 101-like (LOC100811916), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:47393458..47393960 (- strand)
Length: 503
Type: three_prime_UTR
Position: Chr01:47393961..47394036 (- strand)
Length: 76
Type: CDS
Position: Chr01:47397395..47397560 (- strand)
Length: 166
Type: CDS
Position: Chr01:47397697..47397856 (- strand)
Length: 160
Type: CDS
Position: Chr01:47397957..47398052 (- strand)
Length: 96
Type: CDS
Position: Chr01:47398414..47398499 (- strand)
Length: 86
Type: CDS
Position: Chr01:47398595..47398664 (- strand)
Length: 70
Type: CDS
Position: Chr01:47398665..47398842 (- strand)
Length: 178
Type: five_prime_UTR


>Vigan.01G341500.01
TCTGTTATGG GTAAAGAAGG GAAAGTCATC ATCTGCGCTT TCTCTCCCAC TCTGATAGCT AACATGAAGA ACTAATAGTA
ATTAGGAACT TGTACAGTAG GATCACGAAC ACTCTACGTT TTTTCTTCTC CTCTTCCTAC ACCTACACCA CGCAGCCTTC
CTAGGGTTTC ATTCGATCAT GAACTGTGAG GTCTGTCAGC TCAAGGAATT AGAACTCGAG CATTTCGAGA TACGTGAGGT
TTTGCGATGC ATATTGCACA CCATCGTCTT TCACCGTGCC TTGGGTCTTG TGCGCCCTAA AGACGTTGAC TTGGAGCTTT
TTGATGTAAC TTACGTGCAA TGTGGAGAGG CAGAGCTTGA AAAGAAAATA GATGAAAAGA TTGAGCAGTT TGTTTGTTGG
GTGGAGAAGC ACCCAAACAA AAAGAGTCAG ATATGTTTAT CTTTCTATGA GGTGAAAAAC AAACAGGCGT CTTGGTTCAG
TAACAAGATT GAACGTTTGT ATTGGGAGCA GTGGTATATT AATCTGAATG TGGCTCAGCA TAAGTTGCAT TCTAGCAAGT
ATCATCATCC CAAAGTTGTA GATCCAGGAG AGGGAGCGTT GGAGGATAGA AATGCCCGTA GTGCAGCACT GGAGGCAGCA
CTGCGTGAGG TTTTGTTTCA GATAATTAAA TTTGTTAATG AGAAAAAGGA TCACGTTCCA CCAATTCCAA ATCTTGAGGG
CGCTGTTTCA TTTCCCTATG AAATTACAAT ACCTAGTTCA TCAGATTCTG CATTTGGGAT GGACATGATC AAGAGAATGC
TCCAGACAGG GCATCCAACA ATGCTAAGTT GATTGTCAAA GTTTGTAGAG CGGTCTATGG GGTTAAAGGT ATTCTTGTTC
ATATGTTTAA GCTTGAAATA TGATGCTAAA GAAAGCCAAG GAATGCAGGG TTCAATCTCA TCGTGGATAG CATATAGCAG
AATCTATAGG TGCAAAATGA CTTAAATATA TATTTTTTCA AATATACATC CTTGTTAAAG CTCTCGTTTT GTATCTAGTC
TTTATTCTAC TCATCTCTCA ACACATTTAT CCATGGTAAC TGAAACGCTT CATTCCTTTG AAGCATAACA GGAAGTTAAT
CTTGAATTTA GGTCTTTCAG TTTATATGAT ATAGTGGTGA AGTCGTTGAG AAATTTGCAG TAAAGATTAT GATAAAATAT
AGAAATGCTT TCAGTAAATT ATGGAATTAT CAGCATATTG ATTATTTATT TTTGAATCGA TATTTGTTAC TTCGTAATCT
GTTTGTCTAA ATTGCGTCAC GACACCTTCC CTCGTTACCT GGGTCACGAA TGGGA

>Vigan.01G341500.01
ATGAACTGTG AGGTCTGTCA GCTCAAGGAA TTAGAACTCG AGCATTTCGA GATACGTGAG GTTTTGCGAT GCATATTGCA
CACCATCGTC TTTCACCGTG CCTTGGGTCT TGTGCGCCCT AAAGACGTTG ACTTGGAGCT TTTTGATGTA ACTTACGTGC
AATGTGGAGA GGCAGAGCTT GAAAAGAAAA TAGATGAAAA GATTGAGCAG TTTGTTTGTT GGGTGGAGAA GCACCCAAAC
AAAAAGAGTC AGATATGTTT ATCTTTCTAT GAGGTGAAAA ACAAACAGGC GTCTTGGTTC AGTAACAAGA TTGAACGTTT
GTATTGGGAG CAGTGGTATA TTAATCTGAA TGTGGCTCAG CATAAGTTGC ATTCTAGCAA GTATCATCAT CCCAAAGTTG
TAGATCCAGG AGAGGGAGCG TTGGAGGATA GAAATGCCCG TAGTGCAGCA CTGGAGGCAG CACTGCGTGA GGTTTTGTTT
CAGATAATTA AATTTGTTAA TGAGAAAAAG GATCACGTTC CACCAATTCC AAATCTTGAG GGCGCTGTTT CATTTCCCTA
TGAAATTACA ATACCTAGTT CATCAGATTC TGCATTTGGG ATGGACATGA TCAAGAGAAT GCTCCAGACA GGGCATCCAA
CAATGCTAAG TTGA

>Vigan.01G341500.01
MNCEVCQLKE LELEHFEIRE VLRCILHTIV FHRALGLVRP KDVDLELFDV TYVQCGEAEL EKKIDEKIEQ FVCWVEKHPN
KKSQICLSFY EVKNKQASWF SNKIERLYWE QWYINLNVAQ HKLHSSKYHH PKVVDPGEGA LEDRNARSAA LEAALREVLF
QIIKFVNEKK DHVPPIPNLE GAVSFPYEIT IPSSSDSAFG MDMIKRMLQT GHPTMLS*