GBrowse Details

Vigan.01G343800.01

Basic Information:
Name: Vigan.01G343800.01
Multiple alignment
Variant Information
Position: Chr01:47605636..47609456 (+ strand)
Length: 3821
Functional Information:
Description: Similar to Uncharacterized protein. [I1K1S1, Glycine max]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide TPR2 (IPR013105)
Tetratricopeptide repeat (IPR019734)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.18,11.66,15.28,5.77,22.25,14.65,12.03,13.72
Arabidopsis thaliana homolog: AT2G15790.1
Automatic updates:
Name: NM_001357085 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase CYP8 (CYP8), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:47605636..47605964 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr01:47605965..47606135 (+ strand)
Length: 171
Type: CDS
Position: Chr01:47606224..47606724 (+ strand)
Length: 501
Type: CDS
Position: Chr01:47607014..47607101 (+ strand)
Length: 88
Type: CDS
Position: Chr01:47607204..47607256 (+ strand)
Length: 53
Type: CDS
Position: Chr01:47607745..47607846 (+ strand)
Length: 102
Type: CDS
Position: Chr01:47608201..47608276 (+ strand)
Length: 76
Type: CDS
Position: Chr01:47608875..47608912 (+ strand)
Length: 38
Type: CDS
Position: Chr01:47609011..47609064 (+ strand)
Length: 54
Type: CDS
Position: Chr01:47609065..47609456 (+ strand)
Length: 392
Type: three_prime_UTR


>Vigan.01G343800.01
AAGAATACCA GTGTACACTT ATCTGCATTT CTATATTTCT TTACAATTGA ACTAAACCAA ATGCAACAAA TTAGTTTTAA
CAGAACTAAA AGATTACTAA TTAAACTAGT GTATTTGCTG CTTTTCCTTA TTGTTGCGCA GACAAACTGG AGAAGAAAAG
GCGATCAGTG ACACGTGGAA TGGTTAACTG TATAAGTTTT GTCGTTCGCG GCACGAAAAC AAAGGAGTTT GAAATTAAAA
AGCGGGATTA GGGTTTTGTA CTCAACTTCC CTACCTATTT CATCTTCCTC TTTCCATTCT TGCTTTTCTC TCATCTTCAC
CTTCCCAAAA TGGTGAACCC TAAATGCTTC TTGGACATTA GTATCGCTGG CGAGTTAGAG GGTAGAATCG TTATCGAACT
TTTTCAGGAT GTGGTTCCCA AAACCGCGGA GAATTTCAGG GCCCTTTGCA CTGGCGAAAA GGGCATAGGA CCCAACACCA
ATGTCCCCCT TCACTATAAG GGAGTATGTT TTCACCGTGT GATCAAGGGG TTCATGATCC AAGGTGGCGA CATCTCCGCT
GGCGACGGCA CAGGAGGGGA ATCTATATAC GGCCTGAAGT TCGAGGATGA AAACTTGGAG CTGAAGCACG AGAGGAAGGG
GATGCTTTCC ATGGCCAATG CGGGACCCAA CACCAACGGT TCTCAGTTCT TCATCACCAC CACACGCACC CCTCACTTGG
ACGGTAAACA TGTCGTGTTC GGAAGAGTTG TTAAAGGAAT GGGCGTTGTT CGCTCAGCAG AACACATTGT TACTGGCGAA
AACGACCGAC CCACTCAGAC TGTTGTAATC GAGGATTGCG GGGAAATTCC CGAAGGGCAA GATGATGGAG TTGTTAACTT
CTTTAAGGAT GGTGACACTT ATCCGGATTG GCCCGCAGAT CTTGATGTCA AACCTGATGA GCTTTCTTGG TGGATGAGTG
CTGTGGATTC TATCAAGGCT CTGGGGAATG AGCAGTACAA GAAGCAAGAT TATAAGATGG CATTGAGAAA GTATCGCAAA
GCGTTGCGCT ATTTGGATGT GTGTTGGGAG AAGGACGACA TTGACCAAGA GAACAGTGCT TCATTAAGGA AGACAAAATC
TCAAATCTTT ACCAATAGTT CTGCTTGTAA ATTGAAAATA GGTGATCTAC AAGGAGCACT ACTGGATTCA GACTTTGCAA
TGCATGATGG AGATAATGCA AAAGCTCTGT TTCGAAAAGG CCAGGCTTAT ATGTTACTCA ATGACCTGGA TTCTGCTGTT
GAAAGCTTCA AGAAAGCATT AGAGTTGGAG CCTAATGATG GAGGGATTAA AAAGGAGTAT GCCACTGCCA GGAAAAAGGT
TGCTGATAGA CGTGATAGAG AGAAAAAGGC TTATTCTAAA ATGTTCAAGT AGAGGTCCTG AAGTAATGGT GCATGCAGCT
GAAAAATCAA ATGTCTCTGG GGGAATGCCA ATTACAGTGC CAACAATTTC TGTTTTTTCT TGTCAGTAGT CTTTGAAAAA
AATCTGATAT AGTGTATGTT TTCAAATTTA TGCTTTCTAG ATTGTGAAGT TGTGACAGAG CTATCCATAT CTTACTTTTT
GTTCTGTCAA ACTCTTTGAT CATCAACCTC TAACCGGTGA TTTTTGTGTA AAAGAGAAAG GCAGATTGAG ACATCTCATA
ACAAGACTTC CCAACAACTC ACTTGCCATG TTTTTCTTTG CTTTTATCCT CCAATGGTAA ATGGTCAACC AGAAGCATTT
CTGGCAGCGT GTTAATATCA AGACAACAAA TCAGTAGAAT TCCC

>Vigan.01G343800.01
ATGGTGAACC CTAAATGCTT CTTGGACATT AGTATCGCTG GCGAGTTAGA GGGTAGAATC GTTATCGAAC TTTTTCAGGA
TGTGGTTCCC AAAACCGCGG AGAATTTCAG GGCCCTTTGC ACTGGCGAAA AGGGCATAGG ACCCAACACC AATGTCCCCC
TTCACTATAA GGGAGTATGT TTTCACCGTG TGATCAAGGG GTTCATGATC CAAGGTGGCG ACATCTCCGC TGGCGACGGC
ACAGGAGGGG AATCTATATA CGGCCTGAAG TTCGAGGATG AAAACTTGGA GCTGAAGCAC GAGAGGAAGG GGATGCTTTC
CATGGCCAAT GCGGGACCCA ACACCAACGG TTCTCAGTTC TTCATCACCA CCACACGCAC CCCTCACTTG GACGGTAAAC
ATGTCGTGTT CGGAAGAGTT GTTAAAGGAA TGGGCGTTGT TCGCTCAGCA GAACACATTG TTACTGGCGA AAACGACCGA
CCCACTCAGA CTGTTGTAAT CGAGGATTGC GGGGAAATTC CCGAAGGGCA AGATGATGGA GTTGTTAACT TCTTTAAGGA
TGGTGACACT TATCCGGATT GGCCCGCAGA TCTTGATGTC AAACCTGATG AGCTTTCTTG GTGGATGAGT GCTGTGGATT
CTATCAAGGC TCTGGGGAAT GAGCAGTACA AGAAGCAAGA TTATAAGATG GCATTGAGAA AGTATCGCAA AGCGTTGCGC
TATTTGGATG TGTGTTGGGA GAAGGACGAC ATTGACCAAG AGAACAGTGC TTCATTAAGG AAGACAAAAT CTCAAATCTT
TACCAATAGT TCTGCTTGTA AATTGAAAAT AGGTGATCTA CAAGGAGCAC TACTGGATTC AGACTTTGCA ATGCATGATG
GAGATAATGC AAAAGCTCTG TTTCGAAAAG GCCAGGCTTA TATGTTACTC AATGACCTGG ATTCTGCTGT TGAAAGCTTC
AAGAAAGCAT TAGAGTTGGA GCCTAATGAT GGAGGGATTA AAAAGGAGTA TGCCACTGCC AGGAAAAAGG TTGCTGATAG
ACGTGATAGA GAGAAAAAGG CTTATTCTAA AATGTTCAAG TAG

>Vigan.01G343800.01
MVNPKCFLDI SIAGELEGRI VIELFQDVVP KTAENFRALC TGEKGIGPNT NVPLHYKGVC FHRVIKGFMI QGGDISAGDG
TGGESIYGLK FEDENLELKH ERKGMLSMAN AGPNTNGSQF FITTTRTPHL DGKHVVFGRV VKGMGVVRSA EHIVTGENDR
PTQTVVIEDC GEIPEGQDDG VVNFFKDGDT YPDWPADLDV KPDELSWWMS AVDSIKALGN EQYKKQDYKM ALRKYRKALR
YLDVCWEKDD IDQENSASLR KTKSQIFTNS SACKLKIGDL QGALLDSDFA MHDGDNAKAL FRKGQAYMLL NDLDSAVESF
KKALELEPND GGIKKEYATA RKKVADRRDR EKKAYSKMFK *