GBrowse Details

Vigan.01G347300.01

Basic Information:
Name: Vigan.01G347300.01
Multiple alignment
Variant Information
Position: Chr01:48060872..48072061 (- strand)
Length: 11190
Functional Information:
Description: Similar to Zeaxanthin epoxidase, chloroplastic. [V7CEX1, Phaseolus vulgaris]
GO: Biological Process: metabolic process (GO:0008152)
Biological Process: abscisic acid biosynthetic process (GO:0009688)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: chloroplast (GO:0009507)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zeaxanthin epoxidase [overall] activity (GO:0009540)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Forkhead-associated (FHA) domain (IPR000253)
Monooxygenase, FAD-binding (IPR002938)
Aromatic-ring hydroxylase-like (IPR003042)
SMAD/FHA domain (IPR008984)
Zeaxanthin epoxidase (IPR017079)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.10,5.49,24.74,260.78,0.41,9.97,1.63,38.44
Arabidopsis thaliana homolog: AT5G67030.1
Automatic updates:
Name: NM_001289332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zeaxanthin epoxidase (ZEP), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:48060872..48062070 (- strand)
Length: 1199
Type: three_prime_UTR
Position: Chr01:48062071..48062151 (- strand)
Length: 81
Type: CDS
Position: Chr01:48062538..48062622 (- strand)
Length: 85
Type: CDS
Position: Chr01:48062713..48062801 (- strand)
Length: 89
Type: CDS
Position: Chr01:48062896..48062950 (- strand)
Length: 55
Type: CDS
Position: Chr01:48063180..48063266 (- strand)
Length: 87
Type: CDS
Position: Chr01:48063368..48063432 (- strand)
Length: 65
Type: CDS
Position: Chr01:48063567..48063612 (- strand)
Length: 46
Type: CDS
Position: Chr01:48063862..48063965 (- strand)
Length: 104
Type: CDS
Position: Chr01:48064047..48064161 (- strand)
Length: 115
Type: CDS
Position: Chr01:48064373..48064464 (- strand)
Length: 92
Type: CDS
Position: Chr01:48065109..48065320 (- strand)
Length: 212
Type: CDS
Position: Chr01:48069234..48069349 (- strand)
Length: 116
Type: CDS
Position: Chr01:48069428..48069528 (- strand)
Length: 101
Type: CDS
Position: Chr01:48069725..48069799 (- strand)
Length: 75
Type: CDS
Position: Chr01:48069965..48070127 (- strand)
Length: 163
Type: CDS
Position: Chr01:48071176..48071693 (- strand)
Length: 518
Type: CDS
Position: Chr01:48071694..48072061 (- strand)
Length: 368
Type: five_prime_UTR


>Vigan.01G347300.01
TCCTGCTTCA GATTCTTCCT ACGTGGGCGA GCTTACAACA TACACACCAC TACCATCCAT CACCACAATT ATGTGTCTGT
CACTGTCACC CAACATTAGC AACCACTGAC CTCATTTCTC AAACGTTAAT TCCAAATTAC AAAACTTACA TCTATTTTCG
ACATCTTCGT TTTCCTGATT TTTCTAGCCA CTAACTTTAA ACCACTGATT CTGTTGTCCA TGTTTATTCG TCATTAGATT
TTGTTATTTC CATTCATTGT CAAAACTTCA ACATGTAATC ATATAAATAT AACTTCTCTT GAACAACCTA GTATTTGAGT
TTTGAGTTGA GCCACACAAG ATACACATTC ACACACGCAC CAACAACCAT GGCTTCTACT TTGTGTTACA ATTCTCTTAA
CCCTTCAACA ACTGCTTTCT CAAGAACCCA CTTTTCAGTT CCCTTGAATA AAGAGCTTCC ATTGGATGCT TCACCTCTTG
TTGGCTATAA CTGTCCCCTG GGATGTAGAA CCAGGAAGCA GAGGAGAAAA GTGATGTATG TGAAAGGTGC CGTGGTAGAG
GCTCCACCAA GTGTTTCACC CTCGTCACAA GGTGGAAGTG GGGCCCCTTC GAAGGAGCAG CTTCGGGTAC TTGTTGCTGG
TGGAGGGATT GGAGGGTTGG TTTTTGCGTT GGCTGCGAAG AGAAAGGGGT TTGATGTGGT GGTGTTTGAG AAGGACCTGA
GTGCTGTAAG AGGGGAGGGA CAGTATAGGG GTCCAATTCA GATCCAGAGC AATGCTTTGG CTGCTTTGGA AGCTATAGAT
TCAGAGGTTG CAGAGGAAGT TATGAGAGTT GGTTGCATCA CGGGTGATAG AATCAATGGA CTTGTTGATG GGGTTTCTGG
TTCTTGGTAC GTCAAGTTTG ATACATTCAC TCCTGCTGTG GAACGTGGGC TTCCAGTCAC AAGGGTCATT AGTCGAATGG
TTTTACAAGA GATTCTTGCC CGCGCAGTTG GGGAAGATAT CATTATGAAT GCTAGTAATG TTGTTAATTT TGTGGATGAT
GGAAACAAGG TAACAGTAGA ACTTGAGAAT GGTCAGAAAT ATGAAGGAGA TCTATTGGTT GGAGCGGATG GTATATGGTC
GAAGGTGAGG AAGCAATTAT TTGGGCACAA AGAAGCTGTT TACTCTGGCT ATACTTGTTA CACTGGCATT GCAGATTTTG
TGCCTGCTGA CATTGAAACT GTTGGATACC GTGTATTCTT GGGACACAAA CAATACTTTG TATCTTCAGA TGTTGGTGCT
GGAAAGATGC AATGGTATGC ATTCCACAAA GAACCTCCCG GTGGTGTTGA TGGCCCCAAC GGAAAAAAGG AAAGGCTGCT
TAAGATATTT GAGGGTTGGT GTGACAATGC TGTAGATCTC ATACTTGCCA CAGAAGAAGA TGCAATTCTA AGAAGAGACA
TATATGACAG GATACCAACA TTGACGTGGG GAAAGGGTCG TGTGACTTTG CTTGGGGATT CCGTCCATGC CATGCAGCCA
AACATGGGCC AAGGAGGGTG CATGGCTATT GAGGACAGTT ATCAACTTGC ATTGGAGTTG GACAATGCAT GGGAACAAAG
TGTTAAATCA GGGAGTCCAA TTGACATTGA TTCTTCCCTA AGGAGCTACG AGAGAGAAAG AAGACTACGA GTTGCCATTA
TTCATGGAAT GGCTAGAATG GCCGCTCTCA TGGCTTCAAC TTACAAGGCA TATCTGGGTG TTGGTCTTGG CCCTTTAGAA
TTTTTGACCA AGTTTCGCAT ACCACATCCT GGAAGAGTTG GAGGAAGGTT TTTCGTTGAC ATCATGATGC CTTCTATGTT
GAGCTGGGTC TTAGGTGGCA ATAGCTCCAA ACTTGAGGGT AGACCACTAA GTTGCAGGCT CTCAGACAAA GCTAATGATA
AGTTACGCCG ATGGTTTGAA GATGATGAAG CCCTTGAGCG TGCTATTAAT GGAGAGTGGA TTTTATTACC GCATGGAGAT
GGAACAAGTC TTTCAAAGCC TATAGTTTTA AGTCGAAATG AGATGGAACC CTTCATAATC GGGAGTGCAC CCGCGCAAAA
TCATCCTGGC ACTTCAGTTA CAATACCTTC ACCTCAGGTT TCTCCAAGGC ATGCTCGAAT TAACTATAAG GATGGTGCCT
TCTTCTTGAT TGATTTGCGG AGTGAACATG GCACCTGGAT CATTGACAAT GAGGGAAAGC AGTACCGGGT GCCCCCTAAT
TATCCTGCTC GCATTCGCCC ATCTGATGGT ATTCAGTTTG GTTCTGAGAA GGTTTCATTT CGTGTTAAGG TGACAAGATC
TGTTCCAAGA ATCTCAGAGG ATGAAAGACC TCTGACGTTG CAGGAAGCGT GAGTGGTTTT GTTCAGTGGC AATTTGTAAG
TAATGGAAAA GTTATACAGA GAAAATTTAA ATTTGTAGAG CACTATCTGC GTTACTTTAG GGTGGGGTAT TATACAACGA
TCAAGTTATG TTACATGTTT ATATGGACTT TTAGAGGGAT TGTTGGGTAT AAATTCGTTA CCCCACTCCA ATACTTTTTG
TGTAATAACA TTTGTTAGTT AGATAGATTT ATAACACGAC TGAAACTTGC ACCACATTAA TGTTGAATGG AGTAGGCAAT
GCTAAGATGA GAAATTTTTT CACTTTTAAT TGTGATTTAC AGAATGAAAC TATGCTTGTT AGTATAAGAG TGGCAAATTA
AATCGTTTAA TTTGGAACGA AACTGTGTTA AAGATACAAA AACCTAGTTG TAAATAATCT AGTCGAGGTT AAGATGAAAA
TATTTTGACA AAGAATGAGA TCAAGATAAA TGTTTTTTTA TTTATGCTAG CATAGATATC TAGTCAGGAT TGTTTTGAAT
TTTTAGTCCA GACTAGGTTA AAACTTAAAT AATTGAAAAT TTGAGTTTGT AAAATAGTCA TGACTTATGG ATTAACCCTA
TTTAAGTCTT AATCTTTGTT CTTCACAAAG TGAGATTGTA CCAGTTGACA CAATAGATAA ATTACAAAAC CATAACTTTA
TTGTGATGAG ACATAGGACT ACTCCTTTCA TTTAGACCAT AAGTTTTTTC ATACATAATA AGGTGAAAGA TGTAAGTATC
CCAAATCAAT GTTTGAGAAA TAATTGTAGT TATATTCCAA ATCAATCCCA AATCAATGTT TGAGAAAGAA ATGTGGTTAC
CAGCCTCTTA TGTGAGAATT GACATTGTAT CTCTTGTCAT TGTGTTCTTG TATCTCATAA GTTAGAGTAC AATTTATTCA
TTTTATTTTC TCTTTCCAAC AATTGTTTTT CTATCAAATA ATATGATCAT GTTCCTTAAA CGGGTAGGCT TTTTCTTATG
CTAGCCGTAG ACCTTGAATT AAAAGAACAA TGATCCAATG ATGTTACATA TTCATGTTCT TCCCTTTTGA TATTTTTCTC
TTGTGCTTCT TTATATTGTG GTTCATTGTA ATTTTCTCAT TTGTCAAGAT TCTTACAGAT TCTTATCTAT CATGTTTCTT
GTGATATGAA ACTCAAATAT TGCCCCTACC GAGCCTTAGT TTTTGCTTTT G

>Vigan.01G347300.01
ATGGCTTCTA CTTTGTGTTA CAATTCTCTT AACCCTTCAA CAACTGCTTT CTCAAGAACC CACTTTTCAG TTCCCTTGAA
TAAAGAGCTT CCATTGGATG CTTCACCTCT TGTTGGCTAT AACTGTCCCC TGGGATGTAG AACCAGGAAG CAGAGGAGAA
AAGTGATGTA TGTGAAAGGT GCCGTGGTAG AGGCTCCACC AAGTGTTTCA CCCTCGTCAC AAGGTGGAAG TGGGGCCCCT
TCGAAGGAGC AGCTTCGGGT ACTTGTTGCT GGTGGAGGGA TTGGAGGGTT GGTTTTTGCG TTGGCTGCGA AGAGAAAGGG
GTTTGATGTG GTGGTGTTTG AGAAGGACCT GAGTGCTGTA AGAGGGGAGG GACAGTATAG GGGTCCAATT CAGATCCAGA
GCAATGCTTT GGCTGCTTTG GAAGCTATAG ATTCAGAGGT TGCAGAGGAA GTTATGAGAG TTGGTTGCAT CACGGGTGAT
AGAATCAATG GACTTGTTGA TGGGGTTTCT GGTTCTTGGT ACGTCAAGTT TGATACATTC ACTCCTGCTG TGGAACGTGG
GCTTCCAGTC ACAAGGGTCA TTAGTCGAAT GGTTTTACAA GAGATTCTTG CCCGCGCAGT TGGGGAAGAT ATCATTATGA
ATGCTAGTAA TGTTGTTAAT TTTGTGGATG ATGGAAACAA GGTAACAGTA GAACTTGAGA ATGGTCAGAA ATATGAAGGA
GATCTATTGG TTGGAGCGGA TGGTATATGG TCGAAGGTGA GGAAGCAATT ATTTGGGCAC AAAGAAGCTG TTTACTCTGG
CTATACTTGT TACACTGGCA TTGCAGATTT TGTGCCTGCT GACATTGAAA CTGTTGGATA CCGTGTATTC TTGGGACACA
AACAATACTT TGTATCTTCA GATGTTGGTG CTGGAAAGAT GCAATGGTAT GCATTCCACA AAGAACCTCC CGGTGGTGTT
GATGGCCCCA ACGGAAAAAA GGAAAGGCTG CTTAAGATAT TTGAGGGTTG GTGTGACAAT GCTGTAGATC TCATACTTGC
CACAGAAGAA GATGCAATTC TAAGAAGAGA CATATATGAC AGGATACCAA CATTGACGTG GGGAAAGGGT CGTGTGACTT
TGCTTGGGGA TTCCGTCCAT GCCATGCAGC CAAACATGGG CCAAGGAGGG TGCATGGCTA TTGAGGACAG TTATCAACTT
GCATTGGAGT TGGACAATGC ATGGGAACAA AGTGTTAAAT CAGGGAGTCC AATTGACATT GATTCTTCCC TAAGGAGCTA
CGAGAGAGAA AGAAGACTAC GAGTTGCCAT TATTCATGGA ATGGCTAGAA TGGCCGCTCT CATGGCTTCA ACTTACAAGG
CATATCTGGG TGTTGGTCTT GGCCCTTTAG AATTTTTGAC CAAGTTTCGC ATACCACATC CTGGAAGAGT TGGAGGAAGG
TTTTTCGTTG ACATCATGAT GCCTTCTATG TTGAGCTGGG TCTTAGGTGG CAATAGCTCC AAACTTGAGG GTAGACCACT
AAGTTGCAGG CTCTCAGACA AAGCTAATGA TAAGTTACGC CGATGGTTTG AAGATGATGA AGCCCTTGAG CGTGCTATTA
ATGGAGAGTG GATTTTATTA CCGCATGGAG ATGGAACAAG TCTTTCAAAG CCTATAGTTT TAAGTCGAAA TGAGATGGAA
CCCTTCATAA TCGGGAGTGC ACCCGCGCAA AATCATCCTG GCACTTCAGT TACAATACCT TCACCTCAGG TTTCTCCAAG
GCATGCTCGA ATTAACTATA AGGATGGTGC CTTCTTCTTG ATTGATTTGC GGAGTGAACA TGGCACCTGG ATCATTGACA
ATGAGGGAAA GCAGTACCGG GTGCCCCCTA ATTATCCTGC TCGCATTCGC CCATCTGATG GTATTCAGTT TGGTTCTGAG
AAGGTTTCAT TTCGTGTTAA GGTGACAAGA TCTGTTCCAA GAATCTCAGA GGATGAAAGA CCTCTGACGT TGCAGGAAGC
GTGA

>Vigan.01G347300.01
MASTLCYNSL NPSTTAFSRT HFSVPLNKEL PLDASPLVGY NCPLGCRTRK QRRKVMYVKG AVVEAPPSVS PSSQGGSGAP
SKEQLRVLVA GGGIGGLVFA LAAKRKGFDV VVFEKDLSAV RGEGQYRGPI QIQSNALAAL EAIDSEVAEE VMRVGCITGD
RINGLVDGVS GSWYVKFDTF TPAVERGLPV TRVISRMVLQ EILARAVGED IIMNASNVVN FVDDGNKVTV ELENGQKYEG
DLLVGADGIW SKVRKQLFGH KEAVYSGYTC YTGIADFVPA DIETVGYRVF LGHKQYFVSS DVGAGKMQWY AFHKEPPGGV
DGPNGKKERL LKIFEGWCDN AVDLILATEE DAILRRDIYD RIPTLTWGKG RVTLLGDSVH AMQPNMGQGG CMAIEDSYQL
ALELDNAWEQ SVKSGSPIDI DSSLRSYERE RRLRVAIIHG MARMAALMAS TYKAYLGVGL GPLEFLTKFR IPHPGRVGGR
FFVDIMMPSM LSWVLGGNSS KLEGRPLSCR LSDKANDKLR RWFEDDEALE RAINGEWILL PHGDGTSLSK PIVLSRNEME
PFIIGSAPAQ NHPGTSVTIP SPQVSPRHAR INYKDGAFFL IDLRSEHGTW IIDNEGKQYR VPPNYPARIR PSDGIQFGSE
KVSFRVKVTR SVPRISEDER PLTLQEA*