GBrowse Details

Vigan.01G350000.01

Basic Information:
Name: Vigan.01G350000.01
Multiple alignment
Variant Information
Position: Chr01:48463410..48467156 (- strand)
Length: 3747
Functional Information:
Description: Similar to Uncharacterized protein. [C6T174, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
Molecular Function: SUMO ligase activity (GO:0019789)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
SUMO-conjugating enzyme Ubc9 (IPR027230)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.26,34.45,76.37,103.84,84.86,104.12,59.21,96.34
Automatic updates:
Name: NM_001248661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500268 (LOC100500268), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:48463410..48463670 (- strand)
Length: 261
Type: three_prime_UTR
Position: Chr01:48463671..48463733 (- strand)
Length: 63
Type: CDS
Position: Chr01:48464289..48464402 (- strand)
Length: 114
Type: CDS
Position: Chr01:48464488..48464640 (- strand)
Length: 153
Type: CDS
Position: Chr01:48466654..48466737 (- strand)
Length: 84
Type: CDS
Position: Chr01:48466823..48466891 (- strand)
Length: 69
Type: CDS
Position: Chr01:48466892..48467156 (- strand)
Length: 265
Type: five_prime_UTR


>Vigan.01G350000.01
TAAAAAGCAA AAAACATAGA AACGACAACA CCGGTGGCTG CCCCCGAGAA TCTAAGATGG AATCAGGACC GTACGTTCGA
TGGGAGGCAG AGCAATAAAA AATGCCGCGT TTGCCCACAA CCACAACGCA ATGCCAAGGA GGTAAGGGAG AAAGGAAGGA
AGGAAGTGAG AAAAGTGCTT ATTGAACTGG GAAACACTGA GCCGACTCGG AGCGAGTGAA GTGTTGCGTT GCGTTGCGTT
GCGTGACTCG AGAGAGATAG AGAAGATGTC TGGTGGTATT GCTCGTGGAC GTCTCACCGA AGAGCGCAAG TCGTGGCGGA
AGAACCATCC TCATGGTTTT GTTGCGAAGC CGGAGACGCT GCCTGACGGA ACCGTGAACT TGATGGTGTG GCATTGCACA
ATTCCTGGAA AGGCTGGGAC TGATTGGGAG GGTGGCTACT TCCCACTTAC GTTGCACTTT AGTGAAGACT ACCCTAGCAA
GCCGCCAAAG TGTAAATTCC CACAAGGGTT CTTCCATCCA AATGTTTATC CTTCCGGGAC TGTGTGCCTG TCTATACTTA
ACGAGGATAG TGGGTGGAGA CCAGCCATAA CAGTAAAGCA AATTCTTGTG GGTATCCAAG ACTTGCTTGA CCAGCCAAAT
CCTGCTGATC CTGCCCAGAC AGAAGGCTAT CATCTATTCA TCCAGGATGC AGCAGAGTAC AAGAGAAGGG TCCGGCAGCA
GGCAAAGCAA TACCCACCTC TTCTCTAATG TTGCCGTCGC ATCAGCTAAA TTTATAAACT ATTTTTATTA TGGCAGATGC
TTCATCTTTT GTTCCGCATT GAATCTGTTT TTGTCATTGT GATTAATGGC TGCCACAACA TGCAGACATG AATGTTTTAG
CTATTTATGG TTACCCCCCG ATCTGGAAGA AGTGTTAATA TATAAAAAAA TGTGAAAGCA ACCAATGAAT ACTTGTTGGA
GACATGTGCC TGATGTTTGC TGCTACTTTT TTATATGAAT GGATATAAT

>Vigan.01G350000.01
ATGTCTGGTG GTATTGCTCG TGGACGTCTC ACCGAAGAGC GCAAGTCGTG GCGGAAGAAC CATCCTCATG GTTTTGTTGC
GAAGCCGGAG ACGCTGCCTG ACGGAACCGT GAACTTGATG GTGTGGCATT GCACAATTCC TGGAAAGGCT GGGACTGATT
GGGAGGGTGG CTACTTCCCA CTTACGTTGC ACTTTAGTGA AGACTACCCT AGCAAGCCGC CAAAGTGTAA ATTCCCACAA
GGGTTCTTCC ATCCAAATGT TTATCCTTCC GGGACTGTGT GCCTGTCTAT ACTTAACGAG GATAGTGGGT GGAGACCAGC
CATAACAGTA AAGCAAATTC TTGTGGGTAT CCAAGACTTG CTTGACCAGC CAAATCCTGC TGATCCTGCC CAGACAGAAG
GCTATCATCT ATTCATCCAG GATGCAGCAG AGTACAAGAG AAGGGTCCGG CAGCAGGCAA AGCAATACCC ACCTCTTCTC
TAA

>Vigan.01G350000.01
MSGGIARGRL TEERKSWRKN HPHGFVAKPE TLPDGTVNLM VWHCTIPGKA GTDWEGGYFP LTLHFSEDYP SKPPKCKFPQ
GFFHPNVYPS GTVCLSILNE DSGWRPAITV KQILVGIQDL LDQPNPADPA QTEGYHLFIQ DAAEYKRRVR QQAKQYPPLL
*