GBrowse Details

Vigan.01G350500.01

Basic Information:
Name: Vigan.01G350500.01
Multiple alignment
Variant Information
Position: Chr01:48520780..48525879 (+ strand)
Length: 5100
Functional Information:
Description: Similar to iron/ascorbate oxidoreductase DDB_G0283291-like isoform X2. [XP_004509112.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Isopenicillin N synthase (IPR002283)
Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.44,2.23,18.86,14.39,3.27,55.11,2.80,16.70
Arabidopsis thaliana homolog: AT3G50210.1
Automatic updates:
Name: NM_001255066 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable iron/ascorbate oxidoreductase DDB_G0283291-like (LOC100789278), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:48520780..48520916 (+ strand)
Length: 137
Type: five_prime_UTR
Position: Chr01:48520917..48520950 (+ strand)
Length: 34
Type: CDS
Position: Chr01:48521240..48521355 (+ strand)
Length: 116
Type: CDS
Position: Chr01:48522134..48522252 (+ strand)
Length: 119
Type: CDS
Position: Chr01:48522356..48522419 (+ strand)
Length: 64
Type: CDS
Position: Chr01:48522886..48522953 (+ strand)
Length: 68
Type: CDS
Position: Chr01:48523287..48523345 (+ strand)
Length: 59
Type: CDS
Position: Chr01:48523433..48523598 (+ strand)
Length: 166
Type: CDS
Position: Chr01:48523718..48523737 (+ strand)
Length: 20
Type: CDS
Position: Chr01:48523818..48523864 (+ strand)
Length: 47
Type: CDS
Position: Chr01:48525220..48525300 (+ strand)
Length: 81
Type: CDS
Position: Chr01:48525384..48525473 (+ strand)
Length: 90
Type: CDS
Position: Chr01:48525559..48525690 (+ strand)
Length: 132
Type: CDS
Position: Chr01:48525691..48525879 (+ strand)
Length: 189
Type: three_prime_UTR


>Vigan.01G350500.01
CACATTTTTG TAAATTTTTC CTAGGACAAC TCTGTTATAT CTGGTCAGAT ATAAATGTGC CACTTCACCT TCTTCCATAG
CTCACACCAA TCACAACAAG AGAAGTATTT TGAGTTTCAG AGAACCATAA TTCTCCTATG GCGACGAACT TTAGTTCCAT
CCCTGTAATT GATATTAGTC CACTTTTGGC TAAGGCAGAT GATCCCAAAA TGGCCGAGGA CCCTGGTGTA CTCGAGGTTG
TAAGACAATT GGATAAGGCT TGTACAGAGG CAGGCTTCTT CTACGTGAAA GGACATGGTG TTCCGGAGAC TCTCCTCAAA
GAAGTTAGAG ATGTAACGCG CGGATTCTTT GAACTTCCAT ATGAAGAAAA GGCAAAAATC CAAATGACTC CGGCTGCTGG
ATACAGAGGT TATCAAAGGA TTGGACAAAA TGTAACCAAA GGTGCACCTG ACATACATGA AGCTATTGAT TGCTATAGAG
AAGTGACCAA GGGCATGTAT GGAGATCTGG GCAAAACTAT GGAAGGAAGC AACCAGTGGC CACAATATCC TCAACCATTC
AAAGTTCTTA TGGAGGAGTA TATTCGTCTC TGCACAGATC TTGCAAGGAA AATTATGCGT GGAATTGCTT TAGGATTAGG
TGGGTCACCT GATGAATTCG AAGGTCAAAG AGCTGGGGAT CCATTTTGGG TAATGCGGCT CATTGGATAC CCAGGTGTAT
CATCTGTGAA TGGAACACAT GTTCTTAAAA ATGACATTGG ATGTGGAGCG CACACTGATT ACGGTTTATT GACATTGCTG
AACCAAGATG ACGATATAAA CGCACTCCAG GTGAGAAACC TATCTGGCGA ATGGATATCA GCACCTCCAG TTCCTGGGTC
ATTTGTATGC AACATTGGTG ACATGCTAAA GATATACTCC AATGGACTGT ACGAGTCAAC TTTGCACAGG GTTATAAACG
ACAACTCAAA ATACAGAGTC AGCGTAGCAT ACTTCTACGA GACAAACTTC GATACTGCGG TAGAGCCGTT GGACACCCAT
AAAACGAGGG CAAATGGCAA CAGGAAGTTC GAAAGACCAG TCTATGGAGA GCATTTAATT GGCAAGGTTC TCACAAACTT
TGTTCTTGAG TAACCTTGTT TTCCTTGTTC TAATGTGCAA ATAAGCCAGC CATCTAGATC TTGTCTAGCA GGCTTCTAGC
TTCTATTAGA CCTACCACTG CGGATCCTGT ACTATTTTAA GTGCACACAA TAATGTTATT TATCAATGCC TCCATTCTCA
AAATTTATCA CCCGAGTTCA CAACTAGGAC TTGTGAATCC AC

>Vigan.01G350500.01
ATGGCGACGA ACTTTAGTTC CATCCCTGTA ATTGATATTA GTCCACTTTT GGCTAAGGCA GATGATCCCA AAATGGCCGA
GGACCCTGGT GTACTCGAGG TTGTAAGACA ATTGGATAAG GCTTGTACAG AGGCAGGCTT CTTCTACGTG AAAGGACATG
GTGTTCCGGA GACTCTCCTC AAAGAAGTTA GAGATGTAAC GCGCGGATTC TTTGAACTTC CATATGAAGA AAAGGCAAAA
ATCCAAATGA CTCCGGCTGC TGGATACAGA GGTTATCAAA GGATTGGACA AAATGTAACC AAAGGTGCAC CTGACATACA
TGAAGCTATT GATTGCTATA GAGAAGTGAC CAAGGGCATG TATGGAGATC TGGGCAAAAC TATGGAAGGA AGCAACCAGT
GGCCACAATA TCCTCAACCA TTCAAAGTTC TTATGGAGGA GTATATTCGT CTCTGCACAG ATCTTGCAAG GAAAATTATG
CGTGGAATTG CTTTAGGATT AGGTGGGTCA CCTGATGAAT TCGAAGGTCA AAGAGCTGGG GATCCATTTT GGGTAATGCG
GCTCATTGGA TACCCAGGTG TATCATCTGT GAATGGAACA CATGTTCTTA AAAATGACAT TGGATGTGGA GCGCACACTG
ATTACGGTTT ATTGACATTG CTGAACCAAG ATGACGATAT AAACGCACTC CAGGTGAGAA ACCTATCTGG CGAATGGATA
TCAGCACCTC CAGTTCCTGG GTCATTTGTA TGCAACATTG GTGACATGCT AAAGATATAC TCCAATGGAC TGTACGAGTC
AACTTTGCAC AGGGTTATAA ACGACAACTC AAAATACAGA GTCAGCGTAG CATACTTCTA CGAGACAAAC TTCGATACTG
CGGTAGAGCC GTTGGACACC CATAAAACGA GGGCAAATGG CAACAGGAAG TTCGAAAGAC CAGTCTATGG AGAGCATTTA
ATTGGCAAGG TTCTCACAAA CTTTGTTCTT GAGTAA

>Vigan.01G350500.01
MATNFSSIPV IDISPLLAKA DDPKMAEDPG VLEVVRQLDK ACTEAGFFYV KGHGVPETLL KEVRDVTRGF FELPYEEKAK
IQMTPAAGYR GYQRIGQNVT KGAPDIHEAI DCYREVTKGM YGDLGKTMEG SNQWPQYPQP FKVLMEEYIR LCTDLARKIM
RGIALGLGGS PDEFEGQRAG DPFWVMRLIG YPGVSSVNGT HVLKNDIGCG AHTDYGLLTL LNQDDDINAL QVRNLSGEWI
SAPPVPGSFV CNIGDMLKIY SNGLYESTLH RVINDNSKYR VSVAYFYETN FDTAVEPLDT HKTRANGNRK FERPVYGEHL
IGKVLTNFVL E*