GBrowse Details

Vigan.01G353900.01

Basic Information:
Name: Vigan.01G353900.01
Multiple alignment
Variant Information
Position: Chr01:48869112..48873519 (+ strand)
Length: 4408
Functional Information:
Description: Similar to Uncharacterized protein. [I1K299, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Natural resistance-associated macrophage like (IPR001046)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.29,10.13,2.28,42.59,19.07,36.22,7.58
Arabidopsis thaliana homolog: AT1G47240.1, AT2G23150.1, AT4G18790.1, AT5G67330.1
Automatic updates:
Name: NM_001249798 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ferrous ion membrane transport protein DMT1 (DMT1), mRNA.
PubMed ID: 12887581 NCBI(pubmed)
Status: Known Variant
Name: NM_001357778 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max metal transporter Nramp2a (NRAMP2A), mRNA.
PubMed ID: 28868061 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:48869112..48869652 (+ strand)
Length: 541
Type: five_prime_UTR
Position: Chr01:48869653..48870191 (+ strand)
Length: 539
Type: CDS
Position: Chr01:48870683..48870819 (+ strand)
Length: 137
Type: CDS
Position: Chr01:48870920..48871572 (+ strand)
Length: 653
Type: CDS
Position: Chr01:48872931..48873116 (+ strand)
Length: 186
Type: CDS
Position: Chr01:48873117..48873519 (+ strand)
Length: 403
Type: three_prime_UTR


>Vigan.01G353900.01
CTTGTATGTT TCTGCATAAC TGCAATTTAT AAGTATGGTT CGTTTAGAAG ATGTTGTGAC TTTATTATGA TTTTATCATC
CACTTGGTTC TCATTTTGTA GAAATTTGAA TGGAATGAAG AACAGTACCA GCAATTTAAA ATCGTACTTA ACATAAATTC
ATAGAAATTG TCTCATGATC TAAATTGTGC TACAACACAA CATTTGTGCA TCGAAGATCT CACTTAATTT TTCTTAAAAA
TTTGCGAATG GGAAGGAAAT AACACGTTTT GGTGCTTTGA AGGAAACCAG TTATGGAAAA GCTGACGTGT AGAGGATGGT
GGTACGCACA CAAAGATATA TTCCATATGC GTGCTGCACA CACTCTCACC ATGGGCCAAG ATCACGAACG AAGTCCTCCA
CCTCATGTAA ACACATCACA AGATTGAGAC GGCACGTGAC ATGGTGACAC TCACAGCACC CTTTACCATT AAAATAATCC
AAAAGGGGTA GCTTTTATTC GTCAACGTCT CTTCTCGCTG CACTGATAAG ATTCCAACGC CATGTCTGGG AACACGGAAG
AGCAGCCATT GTTGCCGGAC TCCTTTCAGG CAGAAGAGGA GCTGCAAGAA ACTGCCTACG AATCCTCGGA GAAGATCGTG
GTCGTGGGAA TCGACGAGTC CGATAGCGAG GACAATTGGG GGAGAGTGCC TCCTTTCTCA TGGAAGAAGC TATGGCTCTT
TACTGGGCCG GGCTTTCTCA TGAGCATAGC GTTTCTGGAC CCGGGCAACC TCGAGGGGGA CCTTCAGGCC GGAGCTATTG
CCGGCTACTC CCTGCTGTGG CTTTTGATGT GGGCAACGGC CATGGGCCTC TTGATCCAGC TCCTCTCCGC CCGCCTCGGC
GTCGCCACCG GGAAGCACCT CGCTGAACTC TGCAGGGAAG AGTACCCTGC GTGGGCCCGG ATAGTGCTTT GGATCATGGC
CGAACTCGCT CTCATTGGCT CTGATATTCA GGAAGTTATT GGAAGCGCTA TTGCCATCAG GATTCTCAGT CGTGGGGTTG
TGCCCCTTTG GGCGGGAGTC GTCATCACTG CTCTTGATTG TTTTATTTTT CTCTTTCTAG AGAACTATGG TGTGAGGACA
CTGGAAGCTC TTTTTGCTGT TCTCATTGGT GTGATGGCAA TCTCGTTCGC GTGGATGTTT GGTGAAGCAA AGCCCAGTGG
CAAGGAACTG CTTCTTGGCG TTTTGATTCC AAAACTCAGC TCTAGAACTA TACAACAGGC TGTTGGAGTT GTGGGGTGCC
TTATTATGCC GCACAATGTG TTCTTGCACT CTGCTCTCGT TCAGTCAAGG CAGGTTGACC GCAGCAAGAA AGGCCGGGTT
CAAGAAGCTC TTAATTATTA CTCTATAGAG TCCACCCTTG CCCTTGTTGT CTCCTTTATC ATAAATATAT TTGTGACAAC
AGTGTTCGCC AAGGGTTTTT ATGGTTCTGA ACTTGCAAAC AGCATTGGTC TTGCAAATGC AGGACAGTAT CTTGAGGAGA
CATATGGGGG TGGACTTTTT CCAATTTTAT ACATATGGGG TATTGGGTTA TTAGCAGCAG GTCAAAGTAG CACTATTACT
GGTACTTATG CTGGACAATT CATCATGGGA GGTTTTCTAA ATTTGAGATT AAAGAAGTGG ATGAGGGCAT TGATTACTCG
AAGTTGTGCA ATAATCCCAA CCATGATAGT TGCTCTTTTA TTTGACACCT CCGAGGGATC GTTAGATGTT CTGAATGAGT
GGCTCAATGT TCTTCAGTCA GTTCAAATCC CCTTTGCACT TATTCCCTTG CTTTATCTGG TGTCAAAGGA GCAGATAATG
GGCACTTTCA GAATTGGCTA TGTTCTCAAG ATTACATCAT GGCTTGTGGC TGCTCTGGTG ATAGTGATTA ATGGCTATCT
TTTGATGGAA TTCTTTTCCT CCGAAGTTAA TGGTCCCTTG TTTGGCGCTG TAGTGGGTGC AATAACTGCT GCATATGTTG
CATTCTTACT ATACCTTATA TGGAGGGCCA TTGCTTTTTA CCTTGGCAAA GCATAATACG ACCAAAGACA AATTGCTCAT
TCAGAGAGTT AAGTGATCAA TCTTTAAATA TGCAGAATAG GAAGTGTGGT CCATTTTCTC GCCATTGTTA TTAGTATGAC
TAGTCGATGC ATTGGGCAGT GGCACCTTAC TGTTTGCCTG TAACTATAAA CTATGGCAGA TGGCAGAGTA GATTTTAGCA
CTGTGTAATG TGTTACTGTC CAATTTTGTT GTCAAAATGC CTTGGAAGAA CACTAATTAG TTGAGGCAAC CTTCGAAGCT
TAATGTGCAA GCAATAAAAG TAGTTCTTTT CTTTTTCTTT TTCCTTGCTC TTGTTCATAT TCTATCCGAG GAGCTGTGAT
AAATAAGGTT ATACCAAATA ATCAAAGCTA CTTGGTAATA TAATCTCTTA AGGTAACAA

>Vigan.01G353900.01
ATGTCTGGGA ACACGGAAGA GCAGCCATTG TTGCCGGACT CCTTTCAGGC AGAAGAGGAG CTGCAAGAAA CTGCCTACGA
ATCCTCGGAG AAGATCGTGG TCGTGGGAAT CGACGAGTCC GATAGCGAGG ACAATTGGGG GAGAGTGCCT CCTTTCTCAT
GGAAGAAGCT ATGGCTCTTT ACTGGGCCGG GCTTTCTCAT GAGCATAGCG TTTCTGGACC CGGGCAACCT CGAGGGGGAC
CTTCAGGCCG GAGCTATTGC CGGCTACTCC CTGCTGTGGC TTTTGATGTG GGCAACGGCC ATGGGCCTCT TGATCCAGCT
CCTCTCCGCC CGCCTCGGCG TCGCCACCGG GAAGCACCTC GCTGAACTCT GCAGGGAAGA GTACCCTGCG TGGGCCCGGA
TAGTGCTTTG GATCATGGCC GAACTCGCTC TCATTGGCTC TGATATTCAG GAAGTTATTG GAAGCGCTAT TGCCATCAGG
ATTCTCAGTC GTGGGGTTGT GCCCCTTTGG GCGGGAGTCG TCATCACTGC TCTTGATTGT TTTATTTTTC TCTTTCTAGA
GAACTATGGT GTGAGGACAC TGGAAGCTCT TTTTGCTGTT CTCATTGGTG TGATGGCAAT CTCGTTCGCG TGGATGTTTG
GTGAAGCAAA GCCCAGTGGC AAGGAACTGC TTCTTGGCGT TTTGATTCCA AAACTCAGCT CTAGAACTAT ACAACAGGCT
GTTGGAGTTG TGGGGTGCCT TATTATGCCG CACAATGTGT TCTTGCACTC TGCTCTCGTT CAGTCAAGGC AGGTTGACCG
CAGCAAGAAA GGCCGGGTTC AAGAAGCTCT TAATTATTAC TCTATAGAGT CCACCCTTGC CCTTGTTGTC TCCTTTATCA
TAAATATATT TGTGACAACA GTGTTCGCCA AGGGTTTTTA TGGTTCTGAA CTTGCAAACA GCATTGGTCT TGCAAATGCA
GGACAGTATC TTGAGGAGAC ATATGGGGGT GGACTTTTTC CAATTTTATA CATATGGGGT ATTGGGTTAT TAGCAGCAGG
TCAAAGTAGC ACTATTACTG GTACTTATGC TGGACAATTC ATCATGGGAG GTTTTCTAAA TTTGAGATTA AAGAAGTGGA
TGAGGGCATT GATTACTCGA AGTTGTGCAA TAATCCCAAC CATGATAGTT GCTCTTTTAT TTGACACCTC CGAGGGATCG
TTAGATGTTC TGAATGAGTG GCTCAATGTT CTTCAGTCAG TTCAAATCCC CTTTGCACTT ATTCCCTTGC TTTATCTGGT
GTCAAAGGAG CAGATAATGG GCACTTTCAG AATTGGCTAT GTTCTCAAGA TTACATCATG GCTTGTGGCT GCTCTGGTGA
TAGTGATTAA TGGCTATCTT TTGATGGAAT TCTTTTCCTC CGAAGTTAAT GGTCCCTTGT TTGGCGCTGT AGTGGGTGCA
ATAACTGCTG CATATGTTGC ATTCTTACTA TACCTTATAT GGAGGGCCAT TGCTTTTTAC CTTGGCAAAG CATAA

>Vigan.01G353900.01
MSGNTEEQPL LPDSFQAEEE LQETAYESSE KIVVVGIDES DSEDNWGRVP PFSWKKLWLF TGPGFLMSIA FLDPGNLEGD
LQAGAIAGYS LLWLLMWATA MGLLIQLLSA RLGVATGKHL AELCREEYPA WARIVLWIMA ELALIGSDIQ EVIGSAIAIR
ILSRGVVPLW AGVVITALDC FIFLFLENYG VRTLEALFAV LIGVMAISFA WMFGEAKPSG KELLLGVLIP KLSSRTIQQA
VGVVGCLIMP HNVFLHSALV QSRQVDRSKK GRVQEALNYY SIESTLALVV SFIINIFVTT VFAKGFYGSE LANSIGLANA
GQYLEETYGG GLFPILYIWG IGLLAAGQSS TITGTYAGQF IMGGFLNLRL KKWMRALITR SCAIIPTMIV ALLFDTSEGS
LDVLNEWLNV LQSVQIPFAL IPLLYLVSKE QIMGTFRIGY VLKITSWLVA ALVIVINGYL LMEFFSSEVN GPLFGAVVGA
ITAAYVAFLL YLIWRAIAFY LGKA*