VIGGS:GBrowse

Vigan.01G354800.01

Basic Information:

Name:	Vigan.01G354800.01 Multiple alignment Variant Information
Position:	Chr01:48943614..48945506 (- strand)
Length:	1893

Functional Information:

Description:	Similar to lysine-rich arabinogalactan protein 18-like. [XP_004509089.1, Cicer arietinum]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.30,3.40,187.72,68.88,290.51,341.53,164.83,235.41

Automatic updates:

Name:	AB035291 NCBI(nuccore)
Organism:	Vigna angularis
Description:	Vigna angularis GAUR3 mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:48943614..48944333 (- strand)
Length:	720
Type:	three_prime_UTR

Position:	Chr01:48944334..48944417 (- strand)
Length:	84
Type:	CDS

Position:	Chr01:48944836..48945411 (- strand)
Length:	576
Type:	CDS

Position:	Chr01:48945412..48945506 (- strand)
Length:	95
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G354800.01
TCTCTCTCTC TCTCTCTCTC TATCTCTCTC TCTCTCTCTC TATCTCTTAA GACACACACA CACGCACTCA CTCTTCACAA
CTGCGATTCA CGCCAATGGA TCGCAACAGT GTCTTCTCTC TCGCGTTCAT CTGCATTGTA ATAGCCGGCG TTGGAGGCCA
GTCTCCGGCG TCAGCGCCGT CGAGCACACC GGCAACTCCC GCCGCTTCCA CTCCTGCGGC AGCCCCTATC ACACCAAAAT
CACCTGCTCC CGTTGCTTCC CCCAAATCCT CTCCTCCCGC AGCATCACCT AAGGCCGCAA CCCCCGCATC GACGCCGGCG
GCATCTCCTC CAACCGCTAC AGCTCCTGCC CCTGCGACCA AGCCTCCGGC AGCGTCTCCT CCGGCTGCAA CTCCAGTGAG
CTCCCCACCG GCTCCAGTTC CAGTGAGCTC TCCCCCAGCT CCGGTTCCGG TGAGTTCTCC CCCTGCACCT GTGCCGACAG
TTGCTCCCGT AGTGGCGCCC ACCACCCCTG TGACTCCGGC TCCGGCTCCG GGAAAGCACA AGAAGACTAA GAAGCACAGT
GCTCCGGCAC CCTCACCGTC GTTGCTTGGT CCCCCTGCTC CACCCACAGG TGCTCCTGGT CCCAGCGAAG ATGCTACTTC
CCCTGGACCT GCATCTTCTG CCAACGATGA GAGTGGAGCA GAGACCATCA TGTGCTTGAA GAAGATTCTA GGAGGCTTAG
CTTTGGGCTG GGCTACCCTT GTTTTGGTCT TCTAGACAGA CTTTGTTACT GTTATTATAT TCTTGTATTG TATCATTTAT
TTCCTTTTTT TTAATTTTTC CTTTTCTTTC TCACCCTGTT TTGGGTACAC ATTACATTTA TTTACATTGT TACTTGGGAC
TCTATTATTC GATTGATGTC GTTGTCATTA CTGCTGCGTG CTTTTCTTTT AGTAGTGGTG AATCGCCGGA TTCTTTACCT
GTCTTTCAAT TTTCCGGTAG AATAGGAATT ACAATCTTTA GAGCTAATCT TAAGCCATTA CAACAGGATT CAAATTAAGC
ATTCTTAAAA CTTTCCATAT AAATTAAAAC TATTATTTTT ATTTTTAATT GTTCTTCTTT GAAATTTGAA CCATACGTTT
GGGTTACCAC TTTTACCATT AATACCATTA ATAGTTAACC GTGTCTGTGT CTGAGTGATA ATGAAGACAG TAAAGGAATA
AGGTAGAAGA AAACAAGGAA AACAAGGAAT TCATATTTCC CTTTTTCTTT GCTTCTACTC AACCAAACGC GTGTCAATGG
TCCATTGCTT ATTGAATTCG TCATTGCCAT TGACTGGTTG GATGAAATGG TAGAACCATA TCATAACTAT TGCACTGGCT
CCACCCGTAC CACATCACCA ATCCAATCCA ATTGCGATGA TTGCCACACA AAAGATTACT ACTTTTAACT ATTATTTTGT
ATATGGTTCT AAATCATTTA TTTGTAATTA TTGAT

[show][hide][copy]CDS

>Vigan.01G354800.01
ATGGATCGCA ACAGTGTCTT CTCTCTCGCG TTCATCTGCA TTGTAATAGC CGGCGTTGGA GGCCAGTCTC CGGCGTCAGC
GCCGTCGAGC ACACCGGCAA CTCCCGCCGC TTCCACTCCT GCGGCAGCCC CTATCACACC AAAATCACCT GCTCCCGTTG
CTTCCCCCAA ATCCTCTCCT CCCGCAGCAT CACCTAAGGC CGCAACCCCC GCATCGACGC CGGCGGCATC TCCTCCAACC
GCTACAGCTC CTGCCCCTGC GACCAAGCCT CCGGCAGCGT CTCCTCCGGC TGCAACTCCA GTGAGCTCCC CACCGGCTCC
AGTTCCAGTG AGCTCTCCCC CAGCTCCGGT TCCGGTGAGT TCTCCCCCTG CACCTGTGCC GACAGTTGCT CCCGTAGTGG
CGCCCACCAC CCCTGTGACT CCGGCTCCGG CTCCGGGAAA GCACAAGAAG ACTAAGAAGC ACAGTGCTCC GGCACCCTCA
CCGTCGTTGC TTGGTCCCCC TGCTCCACCC ACAGGTGCTC CTGGTCCCAG CGAAGATGCT ACTTCCCCTG GACCTGCATC
TTCTGCCAAC GATGAGAGTG GAGCAGAGAC CATCATGTGC TTGAAGAAGA TTCTAGGAGG CTTAGCTTTG GGCTGGGCTA
CCCTTGTTTT GGTCTTCTAG

[show][hide][copy]PROTEIN

>Vigan.01G354800.01
MDRNSVFSLA FICIVIAGVG GQSPASAPSS TPATPAASTP AAAPITPKSP APVASPKSSP PAASPKAATP ASTPAASPPT
ATAPAPATKP PAASPPAATP VSSPPAPVPV SSPPAPVPVS SPPAPVPTVA PVVAPTTPVT PAPAPGKHKK TKKHSAPAPS
PSLLGPPAPP TGAPGPSEDA TSPGPASSAN DESGAETIMC LKKILGGLAL GWATLVLVF*