GBrowse Details

Vigan.01G357100.01

Basic Information:
Name: Vigan.01G357100.01
Multiple alignment
Variant Information
Position: Chr01:49136845..49139742 (+ strand)
Length: 2898
Functional Information:
Description: Similar to Uncharacterized protein. [I1MVN5, Glycine max]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Plant peroxidase (IPR000823)
Haem peroxidase, plant/fungal/bacterial (IPR002016)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.70,0.14,89.44,28.72,236.22,17.69,366.05,27.74
Arabidopsis thaliana homolog: AT5G67400.1
Automatic updates:
Name: NM_001255473 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxidase (LOC100817540), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49136845..49137023 (+ strand)
Length: 179
Type: five_prime_UTR
Position: Chr01:49137024..49137242 (+ strand)
Length: 219
Type: CDS
Position: Chr01:49137474..49137674 (+ strand)
Length: 201
Type: CDS
Position: Chr01:49137815..49137980 (+ strand)
Length: 166
Type: CDS
Position: Chr01:49139027..49139430 (+ strand)
Length: 404
Type: CDS
Position: Chr01:49139431..49139742 (+ strand)
Length: 312
Type: three_prime_UTR


>Vigan.01G357100.01
TTTATTTTCT AAATTGCTGT GTTGAAAAGA TTCCAAGACA ACTGGCTGCC TCGTGAGCCA TGTCCCACGA CGCTTAGCTT
AACTTGGGTT GCTCTTATAT ATCCCCACTT AAACACCCTT ACTCAGCACC TTTGTCACAA AATCCTCTTT CGTAATTCTT
CCTCTGCAAA ACACAGTAAA TGGGTCGGCT TAATCTCATA CTTGTGTGGT CGCTCTCATT AACACTGTCC CTTTATAATC
TACATCCAAC CTCTGCCCAG CTTAGTCCCA ACCACTACGC TAATGTATGC CCCAATCTCG AAACCATCGT TAGACAGGTA
GTTACCACCA AGTTTCAGCA AACCTTTGTC ACTGTTCCAG CCACCCTTCG TCTCTTCTTC CACGATTGCT TTGTCCAGGG
TTGTGATGCC TCGGTTTTGG TGGCATCTAC TGGGAACAAC CAAGCGGAGA AGGATCACCC AGACAATCTT TCCTTGGCAG
GTGATGGATT TGACACGGTG ATCAAAGCAA AAGCTGCAGT AGATGCTGTC CCTCAGTGCA GGAACAAAGT CTCGTGTGCT
GATATTTTGG CCTTGGCTAC CCGTGATGTT ATCGTACTGT CTGGTGGACC TTCGTATACC GTTGAGTTGG GAAGGTTTGA
TGGGTTAGTT TCAAGAGCTT CTGATGTAAA TGGAAGGCTT CCGCATCCCA CGTTCGATTT GAACCAGCTC AACTCCCTTT
TTGCTGCAAA TGGACTCACC CAAACTGATA TGATTGCTCT CTCAGGTGCA CACACCCTTG GATTCTCCCA CTGCAGCAAG
TTCGCGAATA GAATATATAA CTTCAATGGG CAAACTCCAG TGGACCCATC ATTGAACAGG CAATACGCAA TCCAATTGCA
ACAGATGTGC CCAAGGAACG TGGACCCAAG GATTGCCATT AACATGGATC CAACCACTCC CCGAAGATTC GATAACGTTT
ATTACCAAAA CCTCCAACAA GGAAAGGGCC TTTTCACCTC GGATCAAATC CTCTTCACTG ACCAAAGGTC CAGGAACACT
GTTAATTCCT TTGCTTCAAA TGCTAACGTT TTCAACTCTA ACTTCATTGC TGCTATGACC AAACTGGGTC GTGTTGGAGT
CAAGACAGCA AGAAATGGCA AAATTCGTAC CGATTGTTCT GTGCTTTAAT TCAACACAAT GTCGCAAACA GTGCATGTTT
TAGGGGGAAA GCAAGTTGCA ACCTTAATGG GGGAATTTAA CTTGCAAGGG GAATTTAGAT TAATTGTTTT TAATAAATTT
GTTTGCGAAT GATTCGGGAG TTGCTTGGAT GCCCAGGGGA GGGAGTTTAA GGGAAGAAGA GAAGCTAAGG TTCAGTTTTT
ATTTGTTGTA ATGTTCCAAA TAATTCAAAG TCCTCCAAAA CTATGAACTT TGAATTGTTC ATAAAAATAA TGGTTACCCA
GAGGGAAAAA AAATCAATAA ATGGATTTTA GAATACTTGA A

>Vigan.01G357100.01
ATGGGTCGGC TTAATCTCAT ACTTGTGTGG TCGCTCTCAT TAACACTGTC CCTTTATAAT CTACATCCAA CCTCTGCCCA
GCTTAGTCCC AACCACTACG CTAATGTATG CCCCAATCTC GAAACCATCG TTAGACAGGT AGTTACCACC AAGTTTCAGC
AAACCTTTGT CACTGTTCCA GCCACCCTTC GTCTCTTCTT CCACGATTGC TTTGTCCAGG GTTGTGATGC CTCGGTTTTG
GTGGCATCTA CTGGGAACAA CCAAGCGGAG AAGGATCACC CAGACAATCT TTCCTTGGCA GGTGATGGAT TTGACACGGT
GATCAAAGCA AAAGCTGCAG TAGATGCTGT CCCTCAGTGC AGGAACAAAG TCTCGTGTGC TGATATTTTG GCCTTGGCTA
CCCGTGATGT TATCGTACTG TCTGGTGGAC CTTCGTATAC CGTTGAGTTG GGAAGGTTTG ATGGGTTAGT TTCAAGAGCT
TCTGATGTAA ATGGAAGGCT TCCGCATCCC ACGTTCGATT TGAACCAGCT CAACTCCCTT TTTGCTGCAA ATGGACTCAC
CCAAACTGAT ATGATTGCTC TCTCAGGTGC ACACACCCTT GGATTCTCCC ACTGCAGCAA GTTCGCGAAT AGAATATATA
ACTTCAATGG GCAAACTCCA GTGGACCCAT CATTGAACAG GCAATACGCA ATCCAATTGC AACAGATGTG CCCAAGGAAC
GTGGACCCAA GGATTGCCAT TAACATGGAT CCAACCACTC CCCGAAGATT CGATAACGTT TATTACCAAA ACCTCCAACA
AGGAAAGGGC CTTTTCACCT CGGATCAAAT CCTCTTCACT GACCAAAGGT CCAGGAACAC TGTTAATTCC TTTGCTTCAA
ATGCTAACGT TTTCAACTCT AACTTCATTG CTGCTATGAC CAAACTGGGT CGTGTTGGAG TCAAGACAGC AAGAAATGGC
AAAATTCGTA CCGATTGTTC TGTGCTTTAA 

>Vigan.01G357100.01
MGRLNLILVW SLSLTLSLYN LHPTSAQLSP NHYANVCPNL ETIVRQVVTT KFQQTFVTVP ATLRLFFHDC FVQGCDASVL
VASTGNNQAE KDHPDNLSLA GDGFDTVIKA KAAVDAVPQC RNKVSCADIL ALATRDVIVL SGGPSYTVEL GRFDGLVSRA
SDVNGRLPHP TFDLNQLNSL FAANGLTQTD MIALSGAHTL GFSHCSKFAN RIYNFNGQTP VDPSLNRQYA IQLQQMCPRN
VDPRIAINMD PTTPRRFDNV YYQNLQQGKG LFTSDQILFT DQRSRNTVNS FASNANVFNS NFIAAMTKLG RVGVKTARNG
KIRTDCSVL*