VIGGS:GBrowse

Vigan.01G359400.01

Basic Information:

Name:	Vigan.01G359400.01 Multiple alignment Variant Information
Position:	Chr01:49413793..49417048 (+ strand)
Length:	3256

Functional Information:

Description:	Similar to ADP-ribosylation factor-like protein 8A-like. [XP_004511831.1, Cicer arietinum]
GO:	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, SAR1-type (IPR006687)
	Small GTPase superfamily, ARF/SAR type (IPR006689)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.33,0.95,19.43,38.87,21.69,22.97,38.67,35.77
Arabidopsis thaliana homolog:	AT3G49870.1

Automatic updates:

Name:	NM_001248492 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ADP-ribosylation factor-like protein 8a (LOC100526879), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:49413793..49414118 (+ strand)
Length:	326
Type:	five_prime_UTR

Position:	Chr01:49414119..49414156 (+ strand)
Length:	38
Type:	CDS

Position:	Chr01:49414842..49414923 (+ strand)
Length:	82
Type:	CDS

Position:	Chr01:49415015..49415047 (+ strand)
Length:	33
Type:	CDS

Position:	Chr01:49415167..49415288 (+ strand)
Length:	122
Type:	CDS

Position:	Chr01:49416163..49416324 (+ strand)
Length:	162
Type:	CDS

Position:	Chr01:49416488..49416605 (+ strand)
Length:	118
Type:	CDS

Position:	Chr01:49416606..49417048 (+ strand)
Length:	443
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G359400.01
TTGTATGTCA CGCGCTTCAC AATGAGGATG GGTTAAGTAA TGTCACGACA GGTTCAGATT GTGTAAATAA ACTTTAATCG
CGAGATATGA TCCCCTGCAT CGCCACAATA TTGATCGAGA AGCGCTTCAT TTGTCTCTTC TGTGTGGGAC CCGCGCGATT
CAAAACCCCA AAGCAATAAG CTCTGTTTAG AAAAATAAAA AGCAATTTCC ATTATGCGAA TGCGATAAAC AGTGTTGAAG
GATCTGTGTG GGGGTTCGAG TTGGAACAAC GGAATCGAGA TCCGTGTGTT TGTTTGTGTA GCTTTCTTTA CCAGTGAAGA
GAAGCGATGG GGTTGTGGGA ATCTTTTCTC AATTGGCTTC GCAGCCTCTT TTTCAAGCAG GAAATGGAAT TATCTTTGAT
TGGACTTCAG AATGCTGGGA AGACTTCACT TGTAAATGTT ATTGCTACGG GTGGGTATAG CGAGGACATG ATTCCTACTG
TGGGATTCAA TATGAGGAAA GTAACAAAAG GCAATGTTAC AATAAAGTTA TGGGATCTTG GAGGGCAACC TAGGTTCCGC
AGCATGTGGG AACGCTACTG TCGTGCAGTT TCTGCTATTG TTTATGTTGT TGATGCTGCA GATCAAGATA ACCTTAGCAT
ATCAAAGAGT GAACTACATG ATTTATTGAG TAAGCCATCA TTGAATGGTA TTCCTTTGTT GGTATTGGGG AACAAGATCG
ACAAGCCAGG GGCTCTGTCT AAAGAAGCTT TGACTGACCA AATGGATCTG AAGTCAATTA CTGATAGAGA AGTTTGCTGC
TTCATGATCT CGTGCAAAAA CTCGACTAAC ATTGACTCTG TTATCGATTG GCTTGTAAAG CACTCCAAAT CAAAGAGCTA
AGAGGTTTGT TAATGTTTTG TACTCTACTG TAATTTCAAT GAAATATATC TGTAAGTTGC TGAAGGCGTC TGCATGCCTA
ACTTTGTTGC AGATATTTTA TTCCTGCCCT CTTCTCATTT GCTTCTTAAT GTAATATCAA GTCCAATGGG GTATCAAACC
ACAAGATGAA ATGTCAAGGT TTGTTTTATG AGTGAATCAT ATTGTCATTG TCAGCTTAGT TGCATTTTTA TAATACTTTT
CAGAACTGCA GTTGTGAGAG GAATTGGTTG TCTATCTCTG TAAATTAGAT TAGATTTTTC TAATGGTCAG CATTGTGTGG
GTCTTGTTAT TTCCTGGGGT GTGTCAAATA CAAATAAATT TGAGTGGATT CTTTTTGTCA TTTTATCGTG TTTGAAGTTT
TTTATTCTTG CTTTCTACAA CAATTCCAGC AAAACCGAAA AAGA

[show][hide][copy]CDS

>Vigan.01G359400.01
ATGGGGTTGT GGGAATCTTT TCTCAATTGG CTTCGCAGCC TCTTTTTCAA GCAGGAAATG GAATTATCTT TGATTGGACT
TCAGAATGCT GGGAAGACTT CACTTGTAAA TGTTATTGCT ACGGGTGGGT ATAGCGAGGA CATGATTCCT ACTGTGGGAT
TCAATATGAG GAAAGTAACA AAAGGCAATG TTACAATAAA GTTATGGGAT CTTGGAGGGC AACCTAGGTT CCGCAGCATG
TGGGAACGCT ACTGTCGTGC AGTTTCTGCT ATTGTTTATG TTGTTGATGC TGCAGATCAA GATAACCTTA GCATATCAAA
GAGTGAACTA CATGATTTAT TGAGTAAGCC ATCATTGAAT GGTATTCCTT TGTTGGTATT GGGGAACAAG ATCGACAAGC
CAGGGGCTCT GTCTAAAGAA GCTTTGACTG ACCAAATGGA TCTGAAGTCA ATTACTGATA GAGAAGTTTG CTGCTTCATG
ATCTCGTGCA AAAACTCGAC TAACATTGAC TCTGTTATCG ATTGGCTTGT AAAGCACTCC AAATCAAAGA GCTAA

[show][hide][copy]PROTEIN

>Vigan.01G359400.01
MGLWESFLNW LRSLFFKQEM ELSLIGLQNA GKTSLVNVIA TGGYSEDMIP TVGFNMRKVT KGNVTIKLWD LGGQPRFRSM
WERYCRAVSA IVYVVDAADQ DNLSISKSEL HDLLSKPSLN GIPLLVLGNK IDKPGALSKE ALTDQMDLKS ITDREVCCFM
ISCKNSTNID SVIDWLVKHS KSKS*