VIGGS:GBrowse

Vigan.01G360000.01

Basic Information:

Name:	Vigan.01G360000.01 Multiple alignment Variant Information
Position:	Chr01:49466299..49467671 (- strand)
Length:	1373

Functional Information:

Description:	Similar to CYSTM1 family protein A-like. [XP_006466453.1, Citrus sinensis]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:34.86,43.09,7.41,2.38,14.53,3.90,12.35,5.56

Automatic updates:

Name:	NM_001364473 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306143 (LOC100306143), mRNA.
PubMed ID:	20075913 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:49466299..49466781 (- strand)
Length:	483
Type:	three_prime_UTR

Position:	Chr01:49466782..49467077 (- strand)
Length:	296
Type:	CDS

Position:	Chr01:49467209..49467263 (- strand)
Length:	55
Type:	CDS

Position:	Chr01:49467264..49467671 (- strand)
Length:	408
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G360000.01
TAAAAATAAC AGTGTTGTGG TGGGTTGATT CGAATCTTTA TGTTAAATAA TAACTGAGTG TTGGGGGATG AGAAGAGACA
GAGAAGGAAA GGGTCAAAAA GTTAACGGAA AAATTTGAAA GGTACTTTAA AAAAGGAGGC AGGGCATAGT GGAAAAACAG
CGTCACTCAA ACGGGAATAT TATGTACGTT GTCTTGATAG AAAAGATTTG TTTCAAATAT TTATGGTTTT TGTTTCCTTA
GTCGGTTCAG TTCAGCGAAA GAAACAAGAA ACTTCCTCTT CCTCTCACCG CCGTTGAATT CTCTTTATAT ATACAACACA
ATAAGCTTTT TCTCTTCCCC GCATCGCAAA CTATTCACTC TCCTTGGTTC GTTTCCATCA AGTCTCATCT TCAAAAACAC
TCATCAACAT GAGCTACTAC GATCACCAGC AACAGCCTCC AGTTGGGGTT CCTCCCCCAC AAGGGTATCC AGGAAAGGAT
CCTTATCCCC CACCAGGCTA CCCAGCTCAA GGTTACCCTC CTGCAGGCTA CCCTCCACCA GGCTACCCTC CACAAGGCTA
TGCTCCTCAG TTCCAACAAC CTCCTCCTAG GCAAGAAACC GGTTTTCTTG AAGGATGGTA TGCATCTCTT TCTCTTTCCA
GTTATTATGT GTTGGCGCTG CTGTTTCTTT TCTCTTTTGC TTTATCAAGA TCCTTGTTGA GAAAAACACA AATTTCACAG
TGGGCCGGAG ATCATCTAGG AATTGAATTA GGTTTTTAGA TTTTTAGCCT ATAGGTTGGA CTGAAATTAA TTTAAACTTG
TGTGATGGGT TTGTATTTGT TTGATGAATC TGGAGATAGG AGTCAAAGGT TCTAATAAAT CGTGATTCTT TTGTTTGTTT
CGAATTTTTT TTGTTAACCT TTGTTCTATC TAGTAAAAAT TGACACAAGC TGACATTGTC TTCTGTTGCA GTTTGGCCGC
ACTCTGCTGT TGCTGTTTAC TTGATGCTTG CTTTTAGGTC CTGAAGACAT GATTGGTTGC TGATGAGGTG TCATTGTGGG
AGGCGTATTC TGAGTTCTGG TTTATATATG TTCTGTTAAT TTAATATTAG ATTGGTGTCG ATGATTACTG TATTAATGAT
TACTGTATTT ACACGTGTTA ATTAACGGAT TCATTCTTAG CATAGTTATC ATTATCTTTC ATCATTATAT GCATTTTTCT
TATCTACTGG TATGAATTAA ACAACTTTGT ATCTTATAAC AG

[show][hide][copy]CDS

>Vigan.01G360000.01
ATGAGCTACT ACGATCACCA GCAACAGCCT CCAGTTGGGG TTCCTCCCCC ACAAGGGTAT CCAGGAAAGG ATCCTTATCC
CCCACCAGGC TACCCAGCTC AAGGTTACCC TCCTGCAGGC TACCCTCCAC CAGGCTACCC TCCACAAGGC TATGCTCCTC
AGTTCCAACA ACCTCCTCCT AGGCAAGAAA CCGGTTTTCT TGAAGGATGG TATGCATCTC TTTCTCTTTC CAGTTATTAT
GTGTTGGCGC TGCTGTTTCT TTTCTCTTTT GCTTTATCAA GATCCTTGTT GAGAAAAACA CAAATTTCAC AGTGGGCCGG
AGATCATCTA GGAATTGAAT TAGGTTTTTA G

[show][hide][copy]PROTEIN

>Vigan.01G360000.01
MSYYDHQQQP PVGVPPPQGY PGKDPYPPPG YPAQGYPPAG YPPPGYPPQG YAPQFQQPPP RQETGFLEGW YASLSLSSYY
VLALLFLFSF ALSRSLLRKT QISQWAGDHL GIELGF*