GBrowse Details

Vigan.01G360200.01

Basic Information:
Name: Vigan.01G360200.01
Multiple alignment
Variant Information
Position: Chr01:49478874..49482401 (- strand)
Length: 3528
Functional Information:
Description: Similar to uncharacterized protein. [A3AF58, Oryza sativa subsp. japonica]
InterPro: Protein of unknown function DUF4228, plant (IPR025322)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.54,0.05,5.00,2.49,0.38,22.02,6.31,9.88
Arabidopsis thaliana homolog: AT5G67620.1
Automatic updates:
Name: NM_001254264 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100812463 (LOC100812463), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49478874..49479258 (- strand)
Length: 385
Type: three_prime_UTR
Position: Chr01:49479259..49479393 (- strand)
Length: 135
Type: CDS
Position: Chr01:49481114..49481262 (- strand)
Length: 149
Type: CDS
Position: Chr01:49481363..49481612 (- strand)
Length: 250
Type: CDS
Position: Chr01:49481613..49482401 (- strand)
Length: 789
Type: five_prime_UTR


>Vigan.01G360200.01
GGCGTTGAAG TTGTGGTGGG TCAGAATGAG AGATGGGTCA CGAGTGAAGC TGAGCAGGGA AAGTAATGAC TACCGAACCC
ATTTGCAAAA TTACTTTTCC AATTATAAAA GAGTGCAGAC ACAGCAAAGT TACGCTCAAT TTGACTCCCA GGTGAGTTTT
GCAGATCCAA CACGCCTCAA CTCAAATCCT CAATCTCTAT TTATGTCCAC TGTCTCATCT TTGCTTTGCT ATAATATATA
CTTCCTTTTT TTACCTTTCA TCAACTCAAT TCTCTAGCCA CGCCTCTCCC TGTTCACATC CCCCAAACTT CTCTCAACCC
ACGCTGTCAC CACCATCACA CAACCATTTC TAACTTACCA ATTCTCCATT TATTTAACAA AACAAAGAAA AGAAAGATTC
TGGGCATTTG TCGGATTCGG ATTCGGGTTC GCGTCGGTCA CATCCATCAA ACACACCTTG ATTCTTGGCG TGCGTCAGTG
AACCTGGAAG AGCGTCAGGT TCATTTATAT CTAAACCCAA ACAACTGAAG AAAGAAACAT ACCCTCTCTC TCTCTCTTAC
TCCTCCCTCT CCTGACACCT ACCGTGTTGT ACGTGTCTTT CAAACGTCAC CCACTTCGAA ACGTAAACCA TGTATCCACC
AGATTCATTA TAATATTCAT TTCTCAAATT TCTACTACTC AAATTGATAA ACCCACCACA CTACCACCCA CCTCTCCACT
ACAACAACAA CCTCCATAGC AATCGTTCTG TTTGCAAGCT AGTTCAGGGT GAGTTTGAAA ATAATAACGA TGGGGAATTG
CCAAGCTGCG GAAGCGGCTA CGGTTGTGAT TCAACACCCT GGGAACAAGG TCGAGAGGAT TTATTGGTCG CTTAGCGCAC
ACCAGGTTAT GGACTCCAAC CCTGGTCACT ATGTTGCACT GGTCGTGCCC TCACCTACGC TTAAGTCCGA CAATGGCACA
CCAATGAAAC AACTTAAGCT TCTCCGACCC GATGATACTT TGCATATTGG CCAGGTTTAT CGCTTGATCA GTTTCGAAGA
TGTGTTGAAG GAGTTTGCTT CCAAGAAATG TGGCAAACTC GGGAAATTGC TGAAGGAAAC AGGGGGTCAT GGCGTTCAGA
TGAAGCACAG AGATAACAGA GCTTCAAATC CTAGCCTGAC TTCCAAAAAT GAATACAGTT CCAGTAAGGT GGAACAAGAG
ATTCAACGAA TGGAGAGCAA TGGCAGCAGC AGCAGCAATA ACAAAGGTGT TGGAAGACAT TTCGTTGGTT CTGGTGGGCA
ATGGAAGCCA GCCTTACAGA GCATTGCAGA AATTGGAACT TAAAACGCAC CGTTAGCCCC CACTCCCATG AATAAATCAT
GCAGAGCAAC AGCATCAACA ACCCTTCCTT TCATTTCACG CTTTCCGCTG CATTCACATG ACCCTCCTCC TTCATTAGTA
GTCTACTACA CGTAGGGTTT GTGTTTGTTA AGCTTGTCTC TCTTTCGAAA GGACATGTAT ACATGTTAAC CCTACAATTA
GACATTAGCC AAGTTCTTAT AGAATATAGC ATATGCTCTT TTGTTTTATT TCTTAAACAT ATATAGCTGT GTTCCAAGTC
GCCTATATCA TTATGGTACT ATGGTCGTAG AACAATGTAC CTTTTGTTTG CCTTGAAATT TTAGTAGCGG ACCACTAAGG
ATTTCGTTAA TTGAATGCTT TTCAGACT

>Vigan.01G360200.01
ATGGGGAATT GCCAAGCTGC GGAAGCGGCT ACGGTTGTGA TTCAACACCC TGGGAACAAG GTCGAGAGGA TTTATTGGTC
GCTTAGCGCA CACCAGGTTA TGGACTCCAA CCCTGGTCAC TATGTTGCAC TGGTCGTGCC CTCACCTACG CTTAAGTCCG
ACAATGGCAC ACCAATGAAA CAACTTAAGC TTCTCCGACC CGATGATACT TTGCATATTG GCCAGGTTTA TCGCTTGATC
AGTTTCGAAG ATGTGTTGAA GGAGTTTGCT TCCAAGAAAT GTGGCAAACT CGGGAAATTG CTGAAGGAAA CAGGGGGTCA
TGGCGTTCAG ATGAAGCACA GAGATAACAG AGCTTCAAAT CCTAGCCTGA CTTCCAAAAA TGAATACAGT TCCAGTAAGG
TGGAACAAGA GATTCAACGA ATGGAGAGCA ATGGCAGCAG CAGCAGCAAT AACAAAGGTG TTGGAAGACA TTTCGTTGGT
TCTGGTGGGC AATGGAAGCC AGCCTTACAG AGCATTGCAG AAATTGGAAC TTAA

>Vigan.01G360200.01
MGNCQAAEAA TVVIQHPGNK VERIYWSLSA HQVMDSNPGH YVALVVPSPT LKSDNGTPMK QLKLLRPDDT LHIGQVYRLI
SFEDVLKEFA SKKCGKLGKL LKETGGHGVQ MKHRDNRASN PSLTSKNEYS SSKVEQEIQR MESNGSSSSN NKGVGRHFVG
SGGQWKPALQ SIAEIGT*