VIGGS:GBrowse

Vigan.01G362600.01

Basic Information:

Name:	Vigan.01G362600.01 Multiple alignment Variant Information
Position:	Chr01:49739046..49741103 (+ strand)
Length:	2058

Functional Information:

Description:	Similar to 1-aminocyclopropane-1-carboxylic acid synthase. [Q9SEE8, Vigna radiata var. radiata]
GO:	Biological Process: biosynthetic process (GO:0009058)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: pyridoxal phosphate binding (GO:0030170)
InterPro:	Aminotransferases, class-I, pyridoxal-phosphate-binding site (IPR004838)
	Aminotransferase, class I/classII (IPR004839)
	Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (IPR015421)
	Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (IPR015422)
	Pyridoxal phosphate-dependent transferase (IPR015424)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.09,0.00,0.09,60.70,0.00,1.49,0.74
Arabidopsis thaliana homolog:	AT2G22810.1, AT3G49700.1, AT4G08040.1, AT4G26200.1, AT4G37770.1, AT5G65800.1

Automatic updates:

Name:	NM_001317276 NCBI(nuccore)
Organism:	Vigna radiata
Description:	Vigna radiata 1-aminocyclopropane-1-carboxylate synthase 3 (LOC106767925), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:49739046..49739215 (+ strand)
Length:	170
Type:	five_prime_UTR

Position:	Chr01:49739216..49739362 (+ strand)
Length:	147
Type:	CDS

Position:	Chr01:49739467..49739759 (+ strand)
Length:	293
Type:	CDS

Position:	Chr01:49739881..49740844 (+ strand)
Length:	964
Type:	CDS

Position:	Chr01:49740845..49741103 (+ strand)
Length:	259
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G362600.01
TTTCGACTTC CACTATAAAT ATATAACCAA CCTTACTCCT CTTTTCACAC ACCAATTTCT CTTCAACATT CCACTCCAAA
TATTCTTCTC TTCTCCTTCC TTCGCCCATC AACTCAGTTG CCATCACCTC TTCATTCCTT CCTACCATCC CAAACACACA
AACATACAAA ATGAGGCTCT TGTCCACAAT AGCAACGTGC AATAGTCACG GCCAAGACTC TTCATACTTT TTAGGATGGC
AGGAATACGA GAAAAACCCT TACGATGAAC TCCATAACCC CAAAGGAATT ATCCAGATGG GTTTAGCGGA GAATCAGCTC
TCTTTCGACC TCCTAGAGTC GTGGCTGGCT AAGAACCCTG ACGTCGCCGG CTTCAAACGA GATGGCAAAT CCATATTTAG
AGAACTGGCT CTTTTCCAGG ACTACCACGG TCTCCCTTCC TTCAAAAAGG CATTGGTAGA TTTCATGTCT GAAATCAGAG
GAAACAAAGT CACTTTCGAC CCCAACCACA TCGTTCTCAC TGCCGGTGCC ACTTCCGCAA ACGAAACCTT AATGTTCTGT
CTCGCCGAAC AAGGAGACGC ATTCCTCCTT CCGACTCCTT ATTACCCAGG ATTTGACAGA GACCTCAAGT GGAGAACCGG
TGCTGAGATT GTTCCAATAC AATGCACAAG TTCTAACAAC TTCCAAATTA CGGAGCCAGC TCTGAAACAG GCTTACGAGG
AGGCCCGCAA GCGCAACCTG AGAGTGAAAG GCGTTCTGGT GACAAACCCG TCAAACCCGC TAGGCACCAC CATGTCTCGG
AGTGAATTGA ACCTTCTCGT CGACTTCATC AAAGAGAAAA GCGACACGCA TTTGATAAGC GACGAGATAT ACTCCGGGAC
GGTTTTTAGC TCTCCAGGCT TCGTCAGTGT CATGGAAATC CTCAAGGAGC GAAACGATAC TGACGAAATC TGGAACAGAG
TTCACGTTGT CTACAGTCTA TCCAAAGACT TGGGTTTGCC GGGTTTCCGC GTCGGCGCTA TCTACTCGGA AAACGACACC
GTGGTTGCCG CCGCAACGAA GATGTCGAGC TTTGGGTTGG TCTCTTCGCA GACGCAGTAC CTCCTCTCTG CCATGCTGGG
TGACAAGAAG TTCACCCGAA ACTACATCGT CGAGAATCAG AAGAGGCTTA AGCGACGACA GAGAATGATG GTTTCGGGGT
TACAAAAAGC TGGTATTTCT TGCCTGGAGA GCAATGCCGG GTTGTTTTGC TGGGTGGACA TGAGACACCT TTTGCATTCG
AACACGTTCG AAGCTGAGAT GGAGCTGTGG AAGAAAATAG TGTACCAAGT TGGGTTAAAC ATTTCCCCTG GGTCGTCGTG
CCATTGCACC GAACCAGGGT GGTTCCGTGT GTGTTTCGCT AACATGTCCG AGGAGACTCT CGCCTTGGCC ATGAAACGCT
TGAAGAACTT CGTCGTTGAG TCCACCTGCA CTCAGAGGAG TGCTCTGTTC AACGGAACCT CGAAAAGAAA GTCTCTCACA
AAGTGGGTTT TCCGGTTATC GTCTCGCGAC CATCGTGAAC AGGAAGAACG GTAGCCTGGT CTTAGTCCAT GCGTGTTCGC
TCATGCATAA ATTCATTTCA ATTTCTTTTT CTTTTCCCTT TTTCTGCCTC CCCAATATTT TTGGCGGAGT AGTTCGAAAA
ATTCCCAATT ATTTTTCTTC ATTTTTTTGT GATAAAATTA ATGTAGAGAG AGAAAGAAAA AAAAGCACTC GGTCCATGTG
GACGTGTAGT GGTTGGGTTT CTAGTCAGCC TTGTTTGTAT AAGTTGTTCC ATATCTCAGT CATTAATTCC CTA

[show][hide][copy]CDS

>Vigan.01G362600.01
ATGAGGCTCT TGTCCACAAT AGCAACGTGC AATAGTCACG GCCAAGACTC TTCATACTTT TTAGGATGGC AGGAATACGA
GAAAAACCCT TACGATGAAC TCCATAACCC CAAAGGAATT ATCCAGATGG GTTTAGCGGA GAATCAGCTC TCTTTCGACC
TCCTAGAGTC GTGGCTGGCT AAGAACCCTG ACGTCGCCGG CTTCAAACGA GATGGCAAAT CCATATTTAG AGAACTGGCT
CTTTTCCAGG ACTACCACGG TCTCCCTTCC TTCAAAAAGG CATTGGTAGA TTTCATGTCT GAAATCAGAG GAAACAAAGT
CACTTTCGAC CCCAACCACA TCGTTCTCAC TGCCGGTGCC ACTTCCGCAA ACGAAACCTT AATGTTCTGT CTCGCCGAAC
AAGGAGACGC ATTCCTCCTT CCGACTCCTT ATTACCCAGG ATTTGACAGA GACCTCAAGT GGAGAACCGG TGCTGAGATT
GTTCCAATAC AATGCACAAG TTCTAACAAC TTCCAAATTA CGGAGCCAGC TCTGAAACAG GCTTACGAGG AGGCCCGCAA
GCGCAACCTG AGAGTGAAAG GCGTTCTGGT GACAAACCCG TCAAACCCGC TAGGCACCAC CATGTCTCGG AGTGAATTGA
ACCTTCTCGT CGACTTCATC AAAGAGAAAA GCGACACGCA TTTGATAAGC GACGAGATAT ACTCCGGGAC GGTTTTTAGC
TCTCCAGGCT TCGTCAGTGT CATGGAAATC CTCAAGGAGC GAAACGATAC TGACGAAATC TGGAACAGAG TTCACGTTGT
CTACAGTCTA TCCAAAGACT TGGGTTTGCC GGGTTTCCGC GTCGGCGCTA TCTACTCGGA AAACGACACC GTGGTTGCCG
CCGCAACGAA GATGTCGAGC TTTGGGTTGG TCTCTTCGCA GACGCAGTAC CTCCTCTCTG CCATGCTGGG TGACAAGAAG
TTCACCCGAA ACTACATCGT CGAGAATCAG AAGAGGCTTA AGCGACGACA GAGAATGATG GTTTCGGGGT TACAAAAAGC
TGGTATTTCT TGCCTGGAGA GCAATGCCGG GTTGTTTTGC TGGGTGGACA TGAGACACCT TTTGCATTCG AACACGTTCG
AAGCTGAGAT GGAGCTGTGG AAGAAAATAG TGTACCAAGT TGGGTTAAAC ATTTCCCCTG GGTCGTCGTG CCATTGCACC
GAACCAGGGT GGTTCCGTGT GTGTTTCGCT AACATGTCCG AGGAGACTCT CGCCTTGGCC ATGAAACGCT TGAAGAACTT
CGTCGTTGAG TCCACCTGCA CTCAGAGGAG TGCTCTGTTC AACGGAACCT CGAAAAGAAA GTCTCTCACA AAGTGGGTTT
TCCGGTTATC GTCTCGCGAC CATCGTGAAC AGGAAGAACG GTAG

[show][hide][copy]PROTEIN

>Vigan.01G362600.01
MRLLSTIATC NSHGQDSSYF LGWQEYEKNP YDELHNPKGI IQMGLAENQL SFDLLESWLA KNPDVAGFKR DGKSIFRELA
LFQDYHGLPS FKKALVDFMS EIRGNKVTFD PNHIVLTAGA TSANETLMFC LAEQGDAFLL PTPYYPGFDR DLKWRTGAEI
VPIQCTSSNN FQITEPALKQ AYEEARKRNL RVKGVLVTNP SNPLGTTMSR SELNLLVDFI KEKSDTHLIS DEIYSGTVFS
SPGFVSVMEI LKERNDTDEI WNRVHVVYSL SKDLGLPGFR VGAIYSENDT VVAAATKMSS FGLVSSQTQY LLSAMLGDKK
FTRNYIVENQ KRLKRRQRMM VSGLQKAGIS CLESNAGLFC WVDMRHLLHS NTFEAEMELW KKIVYQVGLN ISPGSSCHCT
EPGWFRVCFA NMSEETLALA MKRLKNFVVE STCTQRSALF NGTSKRKSLT KWVFRLSSRD HREQEER*