GBrowse Details

Vigan.01G363400.01

Basic Information:
Name: Vigan.01G363400.01
Multiple alignment
Variant Information
Position: Chr01:49888809..49892220 (- strand)
Length: 3412
Functional Information:
Description: Similar to cytochrome c oxidase subunit 6a, mitochondrial-like. [XP_004509040.1, Cicer arietinum]
GO: Cellular Component: mitochondrial inner membrane (GO:0005743)
Cellular Component: mitochondrial respiratory chain complex IV (GO:0005751)
Molecular Function: cytochrome-c oxidase activity (GO:0004129)
InterPro: Cytochrome c oxidase, subunit VIa (IPR001349)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:134.16,74.43,135.88,95.46,253.15,212.80,162.86,95.30
Arabidopsis thaliana homolog: AT4G37830.1
Automatic updates:
Name: NM_001249385 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499808 (LOC100499808), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250011 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome c oxidase subunit 6a (LOC100527245), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:49888809..49889320 (- strand)
Length: 512
Type: three_prime_UTR
Position: Chr01:49889321..49889358 (- strand)
Length: 38
Type: CDS
Position: Chr01:49891082..49891124 (- strand)
Length: 43
Type: CDS
Position: Chr01:49891273..49891379 (- strand)
Length: 107
Type: CDS
Position: Chr01:49892059..49892173 (- strand)
Length: 115
Type: CDS
Position: Chr01:49892174..49892220 (- strand)
Length: 47
Type: five_prime_UTR


>Vigan.01G363400.01
CCCCTTCAAA GCTAAAACAG AAAAAAGAAA GAGTCAAACG GCGAGCAATG GCGACATCGC TTGTTCGATC GGGTTTTCTT
CGAACAGCCC TACGTGGAGG CGCTCGCGGC TCCCAGGTTC CCAAGAGAAA CTTTTCTTCC GCTGGTCATC ACGATGATGC
TTACGAGACG GCCAAATGGG AAAAGATTAC ATATCTAGGC ATTGTCAGTT GCACTGCTTT GGCCATTTAT AATCTATCAA
AGGGCCACCC ACACACAGAA GAACCTCCTG CTTACCCATA TTTACATATC CGCAATAAGG AATTCCCATG GGGTCCCGAT
GGGCTATTCG AAACTAAGGA CCACCACTAA GAGAGTATTA GTGGTTTAAT GAAGCTGTTT GTGGCACCGG GGCATTTCTT
TCGTCAATGT TCAAGAAAGT GATTGACTAT TGCGGTTTTT GAAATGTGAT CTACAACTTG CACTTGACAA CATTTGTTTG
CCATGTTTTT ATCTTGTGTT CTTTTTTTTA TGGTTGTAAC AAAATAAAAT TGCCAAACAA AATTATGTTT CTTTTCATGT
CGATTCTTGG TTCAATAAAT TTTGAAAGAA ATCGATCGTG AGGCCGCAGG TTTATATTAT ATTATGTTAT CTCCTTAGCT
GTTTTCTGGT CGATCTTAGC TTTTGTTTTG ATTTTTGAAG AGGCAACCCA TGTTTGTGGA TGGAAAAGTT CCAAATTATA
AAAATGTTAA TTGCTGTATA TATTTTACAG AATTTTTAAC CGCTGGATGT GGGAATAAAT GTTTATGGTT CTATGTTGTT
GATGACTAAT TAGGCAGTTT CCTTAAAGAT AATATGTATT TGAAGTGGGT AAGTGATGGT GT

>Vigan.01G363400.01
ATGGCGACAT CGCTTGTTCG ATCGGGTTTT CTTCGAACAG CCCTACGTGG AGGCGCTCGC GGCTCCCAGG TTCCCAAGAG
AAACTTTTCT TCCGCTGGTC ATCACGATGA TGCTTACGAG ACGGCCAAAT GGGAAAAGAT TACATATCTA GGCATTGTCA
GTTGCACTGC TTTGGCCATT TATAATCTAT CAAAGGGCCA CCCACACACA GAAGAACCTC CTGCTTACCC ATATTTACAT
ATCCGCAATA AGGAATTCCC ATGGGGTCCC GATGGGCTAT TCGAAACTAA GGACCACCAC TAA

>Vigan.01G363400.01
MATSLVRSGF LRTALRGGAR GSQVPKRNFS SAGHHDDAYE TAKWEKITYL GIVSCTALAI YNLSKGHPHT EEPPAYPYLH
IRNKEFPWGP DGLFETKDHH *