GBrowse Details

Vigan.01G364200.01

Basic Information:
Name: Vigan.01G364200.01
Multiple alignment
Variant Information
Position: Chr01:50052320..50054745 (- strand)
Length: 2426
Functional Information:
Description: Similar to Uncharacterized protein. [I1MVF8, Glycine max]
GO: Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Myc-type, basic helix-loop-helix (bHLH) domain (IPR011598)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.67,4.76,11.96,0.43,6.85,4.09,12.59,3.29
Automatic updates:
Name: KT031106 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:50052320..50052895 (- strand)
Length: 576
Type: three_prime_UTR
Position: Chr01:50052896..50052973 (- strand)
Length: 78
Type: CDS
Position: Chr01:50053145..50053519 (- strand)
Length: 375
Type: CDS
Position: Chr01:50053818..50054462 (- strand)
Length: 645
Type: CDS
Position: Chr01:50054574..50054636 (- strand)
Length: 63
Type: CDS
Position: Chr01:50054637..50054745 (- strand)
Length: 109
Type: five_prime_UTR


>Vigan.01G364200.01
AAAGATTGAA CAAAGTTAAC TCACATTTCG CATTCAGTAG AAGAGAAAAA GCTTTGAATA GAGAAAGGAC AAATCAGTGT
TCTGTACGTA AAGTGTTGGT GGCCTAATTA TGATGGAGGA ATCAAACAAA CCAATGGATG ATGCATCAGC ACCCAGCTGG
TTATCTGATT TGGACATGGA TGATTACAAT TTATTTCCAG ATGAGTGTGC CCTGAACTTG AACTTGTTTG ATGATCAAGA
GTTTCTACCA CAATACATTG CCAGTGCCCT TGAAGAACAG ACACAGAGCC TGCAGCGATC TTTGTCTTCG GAGTGCCCTT
CCAAAACTGT GAGCAACTCA TCCACCGATG AAACCAGTTT TGACTTTGAG AGACCAGCCA AGTTACTGAA AACGACAAGC
AGTAGTTGCT GTAACTCTGA CTCATCCACC ATCACCAACA ACCTCTCGCC AAAACTTTCC CCATCCACAT CCTTCTCCTC
CTTTCAGTCT CATATTCTGT CTTTTGACAA CCCCAACTCC TCCCCTCCCA CCACCACCAC CACCACCACC ACCACCACCA
CCCACTTTTA CGGCTTTGAC TTAAACCCAA CGCAGAACGA AATGGTGTCA GTGTCAATGC CCCAATTGAC AAAATCACGC
TTCCCTGATC AAACGCCAAA AGGGTCCTCA AAAAATCACA ACTTTGAAAC AAAACCCTCA CATGGTAAGA GATCTCCTGC
TCACGCTCAG GATCACATCA TGGCCGAGAG GAAGCGAAGA GAGAAGCTCA GCCAGAGCTT CATTGCTCTT GCAGCTCTTG
TTCCTGGCCT GAAGAAGATG GATAAGGCTT CTGTGTTAGG GGACGCTATC AAATATGTGA AAGATCTTAA AGAGCGTTTG
GCAGTGCTTG AAGAGCAGAG CAAGAAAACA AGGGAAGAAT CGGCGGTGGT CCTGAACAAG CCAGAGCTCT CTGGCGATGA
TGATTCTTCT TCATGTGATG AGAGCATTGG TGCTGATAGT GTCAGTGACA CTCTGTTTGA GGTGGAATCA AGAGTGTCAG
GGAAGGAGAT GCTGCTTCGG ATCCACTGCC TCAAGCAAAA GGGGCTTCTC GTCAAATTAC TGGCCGAGAT CCAAAGAAAT
AACCTACTCG TTATTAATAG CAGCATCTTA CCATTCGGTG ATTCTATCCT TGACATTACC ATAGTTGCTC AGATGGGAGA
AAATTACAAT TTGACTATGA AGGAACTTGC CAAGAACCTA CGCGTTTCGG CAAATAAGGT TGTCTCATAA CATAAACGCG
GCTCGAGTAT GGGATACCAT GAAGATATAT GGCAAGAATC AAAACTCTGA ATCAGAATTG GTGCACCAAC CATAGAGTAA
ATAATCCTAA AATGGAATAT TTTCTGTTAA TGTGAGATCT ACTCCAGCTA GCTTACAGTG TTCCTGTGTT CCCCGAAATG
CAGATGATCG ATCCAAAAGG GATATTGTCT TTTTCGTGTT GTGCGTGGTT TCTCAGGCCT TCCGTCTGTG CCTGCTTGAC
AAAACAAAGA GTATTTGAAT AATTTTGTGG AGATATTAGG AATGGTTCCA ATCTGACACG GCTTAGTTAA CGCGAGCTTA
ATTAGAGATA ATAAGTTAAA TTAGTGATTA CTTATGACAC TGACAGCTTT TGAGTTTGAT AATCTGCTCT CTTTAATCTT
TGATCATGTT TGAAAGATGC AAATCTCTCT CTTTAGGCCT TTGTTTGTTT CAATAGAAAA TGAGAAATTC ATATTTAATA
TTGAGGCACC AACATTTATG TAAACCACTT GCTATACATC TAAGTTTATA CTTGGACAAT CATATATCAA TAATCGCGAA
AATTTA

>Vigan.01G364200.01
ATGATGGAGG AATCAAACAA ACCAATGGAT GATGCATCAG CACCCAGCTG GTTATCTGAT TTGGACATGG ATGATTACAA
TTTATTTCCA GATGAGTGTG CCCTGAACTT GAACTTGTTT GATGATCAAG AGTTTCTACC ACAATACATT GCCAGTGCCC
TTGAAGAACA GACACAGAGC CTGCAGCGAT CTTTGTCTTC GGAGTGCCCT TCCAAAACTG TGAGCAACTC ATCCACCGAT
GAAACCAGTT TTGACTTTGA GAGACCAGCC AAGTTACTGA AAACGACAAG CAGTAGTTGC TGTAACTCTG ACTCATCCAC
CATCACCAAC AACCTCTCGC CAAAACTTTC CCCATCCACA TCCTTCTCCT CCTTTCAGTC TCATATTCTG TCTTTTGACA
ACCCCAACTC CTCCCCTCCC ACCACCACCA CCACCACCAC CACCACCACC ACCCACTTTT ACGGCTTTGA CTTAAACCCA
ACGCAGAACG AAATGGTGTC AGTGTCAATG CCCCAATTGA CAAAATCACG CTTCCCTGAT CAAACGCCAA AAGGGTCCTC
AAAAAATCAC AACTTTGAAA CAAAACCCTC ACATGGTAAG AGATCTCCTG CTCACGCTCA GGATCACATC ATGGCCGAGA
GGAAGCGAAG AGAGAAGCTC AGCCAGAGCT TCATTGCTCT TGCAGCTCTT GTTCCTGGCC TGAAGAAGAT GGATAAGGCT
TCTGTGTTAG GGGACGCTAT CAAATATGTG AAAGATCTTA AAGAGCGTTT GGCAGTGCTT GAAGAGCAGA GCAAGAAAAC
AAGGGAAGAA TCGGCGGTGG TCCTGAACAA GCCAGAGCTC TCTGGCGATG ATGATTCTTC TTCATGTGAT GAGAGCATTG
GTGCTGATAG TGTCAGTGAC ACTCTGTTTG AGGTGGAATC AAGAGTGTCA GGGAAGGAGA TGCTGCTTCG GATCCACTGC
CTCAAGCAAA AGGGGCTTCT CGTCAAATTA CTGGCCGAGA TCCAAAGAAA TAACCTACTC GTTATTAATA GCAGCATCTT
ACCATTCGGT GATTCTATCC TTGACATTAC CATAGTTGCT CAGATGGGAG AAAATTACAA TTTGACTATG AAGGAACTTG
CCAAGAACCT ACGCGTTTCG GCAAATAAGG TTGTCTCATA A

>Vigan.01G364200.01
MMEESNKPMD DASAPSWLSD LDMDDYNLFP DECALNLNLF DDQEFLPQYI ASALEEQTQS LQRSLSSECP SKTVSNSSTD
ETSFDFERPA KLLKTTSSSC CNSDSSTITN NLSPKLSPST SFSSFQSHIL SFDNPNSSPP TTTTTTTTTT THFYGFDLNP
TQNEMVSVSM PQLTKSRFPD QTPKGSSKNH NFETKPSHGK RSPAHAQDHI MAERKRREKL SQSFIALAAL VPGLKKMDKA
SVLGDAIKYV KDLKERLAVL EEQSKKTREE SAVVLNKPEL SGDDDSSSCD ESIGADSVSD TLFEVESRVS GKEMLLRIHC
LKQKGLLVKL LAEIQRNNLL VINSSILPFG DSILDITIVA QMGENYNLTM KELAKNLRVS ANKVVS*