GBrowse Details

Vigan.01G366200.01

Basic Information:
Name: Vigan.01G366200.01
Multiple alignment
Variant Information
Position: Chr01:50315283..50319652 (- strand)
Length: 4370
Functional Information:
Description: Similar to Ubiquitin family protein. [XP_007039552.1, Theobroma cacao]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Uncharacterised domain SAYSvFN (IPR019387)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:68.60,35.71,12.66,12.06,14.64,15.47,19.90,13.79
Arabidopsis thaliana homolog: AT2G35360.1
Automatic updates:
Name: NM_001248414 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499994 (LOC100499994), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255661 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max SAYSvFN domain-containing protein (LOC100793775), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:50315283..50315727 (- strand)
Length: 445
Type: three_prime_UTR
Position: Chr01:50315728..50315821 (- strand)
Length: 94
Type: CDS
Position: Chr01:50316499..50316563 (- strand)
Length: 65
Type: CDS
Position: Chr01:50317034..50317143 (- strand)
Length: 110
Type: CDS
Position: Chr01:50317512..50317590 (- strand)
Length: 79
Type: CDS
Position: Chr01:50317683..50317759 (- strand)
Length: 77
Type: CDS
Position: Chr01:50318803..50318935 (- strand)
Length: 133
Type: CDS
Position: Chr01:50319414..50319515 (- strand)
Length: 102
Type: CDS
Position: Chr01:50319516..50319652 (- strand)
Length: 137
Type: five_prime_UTR


>Vigan.01G366200.01
TTTATGAATC TCTTTTAGAA TGAATTAATT AATGGGTCTA AATTAGCTTT AATGGAATTA AAATGAATTT GATTCAAAAG
CATATTTTAA TTAATTGGTA TTGATGATGG TAGAGTGGTA CGTGGTTTGA TTCAGAGATG GGCATGGAGG AACAAGACTC
GGAGAAGAAG GTGGAGATCG TCCTCAAAAC TATTGGTCCT GCACGCCCCT CTCGCCTCCT ACTTCCTTCT TCCATCAAGG
TGCGTGATTT GAGGAGGTTA GTTGCTGAGA ATGTTAATTT ACCAATTGAG AACTTGAGTC TTATTCTGCG TGGATGTGCT
TTGTGTGACA TGAAAAATGG AGATGAATTA TCTGTACAAC TCAATGATGG AGATAGCTTG ATTGTTGCTG TCAAACCAAA
GCCACCCGTG AAGGATGAAT ATGACAATGA TGATGATGAT GAAGATCTGA AGTTTCGGCT TCCTCACTCA TCAAGTCGGT
GGAAGAAGTG GCTTTACACT TTTCTACACG ATAACTTGAA GCTTCCAGAT GTTGTTTTGA TGGTAATTTT CACTCTGAGT
CTGAAGGCGT GGCTTCTCAT AACTTTGTGG TTTATCCTTG CTCCTGTCGC CCACAGATGG GATCTCGGAC CTTTGTATAT
ACTTGCAACT GGCTTTTGTC TCATTCTCTT CAACCTTGGA AAGCGCCAAG CTGGTGACAT CAGTGCATAT TCTATCTTCA
ATGAAGACTT CAGAGAGCTT CCAGGGACGC TTAACGCAGA TCGGCTTGAT AGAGATATAA GAGCAGGACA ATTTTGAGCC
TTGCCGCACT CTTTTCAATC TCCCCGACAT TGATGTCAAG TCACATGATG TATATCTGCA GAATCACAAG GAGATAATTG
ACTATCCAAA GAGTTAACAA GTACAGTACC AATGAAAATG ACAAAGTTTT CCATTAGACC TGCGCCCCTT CTGTGTATAT
ATCATGTACG ATGTACTGAT ACGATTGAGA TGAACGTTTC ATTGTGGATT ATTGGGTCTA TGTCTCTGCT ACCGAGGCTC
CTGTTTATGA ATTTCAGAGT TCACACTTTT GGTGCAGCGC CCACCTTTGG GCCATATATG CAGAGATTTG TCAGGAATCA
AAAATTGAGA GTGGTATTTT AATACTGTTA AGACTATAGC TTTGATCTTT TTTGTTAATC TACAACTTTA GTTAATCTGT
AATTTTTTAA CTCAAAGTAA AAGTTTTGTT AAGAACTGCT GA

>Vigan.01G366200.01
ATGGGCATGG AGGAACAAGA CTCGGAGAAG AAGGTGGAGA TCGTCCTCAA AACTATTGGT CCTGCACGCC CCTCTCGCCT
CCTACTTCCT TCTTCCATCA AGGTGCGTGA TTTGAGGAGG TTAGTTGCTG AGAATGTTAA TTTACCAATT GAGAACTTGA
GTCTTATTCT GCGTGGATGT GCTTTGTGTG ACATGAAAAA TGGAGATGAA TTATCTGTAC AACTCAATGA TGGAGATAGC
TTGATTGTTG CTGTCAAACC AAAGCCACCC GTGAAGGATG AATATGACAA TGATGATGAT GATGAAGATC TGAAGTTTCG
GCTTCCTCAC TCATCAAGTC GGTGGAAGAA GTGGCTTTAC ACTTTTCTAC ACGATAACTT GAAGCTTCCA GATGTTGTTT
TGATGGTAAT TTTCACTCTG AGTCTGAAGG CGTGGCTTCT CATAACTTTG TGGTTTATCC TTGCTCCTGT CGCCCACAGA
TGGGATCTCG GACCTTTGTA TATACTTGCA ACTGGCTTTT GTCTCATTCT CTTCAACCTT GGAAAGCGCC AAGCTGGTGA
CATCAGTGCA TATTCTATCT TCAATGAAGA CTTCAGAGAG CTTCCAGGGA CGCTTAACGC AGATCGGCTT GATAGAGATA
TAAGAGCAGG ACAATTTTGA 

>Vigan.01G366200.01
MGMEEQDSEK KVEIVLKTIG PARPSRLLLP SSIKVRDLRR LVAENVNLPI ENLSLILRGC ALCDMKNGDE LSVQLNDGDS
LIVAVKPKPP VKDEYDNDDD DEDLKFRLPH SSSRWKKWLY TFLHDNLKLP DVVLMVIFTL SLKAWLLITL WFILAPVAHR
WDLGPLYILA TGFCLILFNL GKRQAGDISA YSIFNEDFRE LPGTLNADRL DRDIRAGQF*