VIGGS:GBrowse

Vigan.01G369600.01

Basic Information:

Name:	Vigan.01G369600.01 Multiple alignment Variant Information
Position:	Chr01:50692689..50695521 (- strand)
Length:	2833

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MV98, Glycine max]
GO:	Biological Process: protein phosphorylation (GO:0006468)
	Molecular Function: protein kinase activity (GO:0004672)
	Molecular Function: protein serine/threonine kinase activity (GO:0004674)
	Molecular Function: ATP binding (GO:0005524)
	Molecular Function: transferase activity, transferring phosphorus-containing groups (GO:0016772)
InterPro:	Protein kinase domain (IPR000719)
	Serine-threonine/tyrosine-protein kinase catalytic domain (IPR001245)
	Serine/threonine-protein kinase, active site (IPR008271)
	Protein kinase-like domain (IPR011009)
	Concanavalin A-like lectin/glucanase, subgroup (IPR013320)
	Protein kinase, ATP binding site (IPR017441)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:33.70,10.29,8.85,7.84,6.76,8.70,8.48,6.19
Arabidopsis thaliana homolog:	AT5G47070.1

Automatic updates:

Name:	NM_001251752 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max NAK-type protein kinase (LOC100305403), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:50692689..50692922 (- strand)
Length:	234
Type:	three_prime_UTR

Position:	Chr01:50692923..50693354 (- strand)
Length:	432
Type:	CDS

Position:	Chr01:50693708..50693830 (- strand)
Length:	123
Type:	CDS

Position:	Chr01:50693989..50694249 (- strand)
Length:	261
Type:	CDS

Position:	Chr01:50694745..50695068 (- strand)
Length:	324
Type:	CDS

Position:	Chr01:50695069..50695521 (- strand)
Length:	453
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G369600.01
GACAGAGGAA GCTATGAAAT TTTTGTGACA AAGCAAAAGA AAACTACATG TTCATATTCC AGCTCGCATA CACACAACAA
ATCACCTTAA CCTTTGAAAT GTCTTTCTTG GTTGGTCTTT TGGTCTTTCT TCCACACAAC GTCGTAAACC CGCTTCACTC
CTGTCTCTCT CTTTCTCTCT CTCTCTCTCT CTTCCCCTAC GCGGGTTTGT TTCTCTCGTG AATATCTTAA ACTTTCATAC
CTCTGCTTCT TCTCCATCGT TCCCATTCAG TATATTTCTT TCACTTCACG GAACCTAACT TTTATTTCCC TTTTCATCTC
TCTTCGTTCC TTATCACAAT TCACCGCCTC AATATATAAT CAAGGTCCCA TTTTTTCATC TGGGCCATCA CCTTAATTCT
CTCTTCCTCT TCTTCTCATC ATTTTTCCTT CTCTTTGATT TGATGGTGAG AAGATGAAGT GTTTCTTCTT CAAAGACAAG
TGTAAATCCG CCCCCGAATT GCATAAGAAG AAAAACCCCG CCGTGAACCG CGCCGCGAAC TCCACCGGCT CCCTATCGTC
GCCCAAGAGC GTGAAGGACT TGTACAGAGA GAAAGAGCAC AGCTTCAGAG TTTTCAATTT TCAGGAGCTC AGAGATGCCA
CCCAAGGTTT CAATAGGACG CTCAAGCTTG GAGAAGGGGG GTTCGGGAGT GTGTATAAAG GATCCATCAG ACCCTCCGAT
GGCCAGGGTG ATCCATTTCC AGTAGCTATC AAAAGGCTCA ACACGCGTGG CTTCCAGGGT CATAAAGAAT GGCTTGCTGA
AGTTCAATTT CTTGGCATTG TTAATCACCC AAATTTGGTT AAGCTTTTGG GATACTGCTC CATGGACGGA GAAAGAGGAA
TCCAACGGCT GCTGGTGTAC GAGTTCATGC CCAACGGGAG CTTGGAGGAT CACCTCTTCA ATAAAAGTTT ACCACCTCTC
CCTTGGAAAA CAAGATTGGA GATTATGCTT GGTGCCGCCC AAGGATTAGC TTATCTCCAT GAAGGACTGG AAATTCAGGT
GATCTACAGA GACTTCAAAT CTTCAAATGT TCTATTGGAT GCGGATTTCC ATCCAAAGCT CTCAGATTTT GGTCTTGCTA
GAGAAGGACC ACAAGGCGAT CAGACTCATG TATCCACTGC GGTGGTTGGG ACACAGGGGT ATGCTGCACC AGAGTACATT
GAAACGGGTC ATCTGAAAGT TCAGAGCGAC ATGTGGAGTT TTGGTGTAGT GCTGTATGAG ATCCTCACAG GAAGAAGATC
ATTGGAAAGA AACCGTCCCA CTGCAGAACA AAAGCTTCTA GATTGGGTGA AACAGTATCC TGCTGACACC AGCAGGTTCG
TGGTGATAAT GGATCCTCGT CTCAGGAACC AGTATTCTCC CCAAGCAGCT CGCAAAATAG CCAAGTTGGC TGATAGCTGC
TTAAAGAAGA ATCCAGAAGA TAGACCATCC ATGAGTCAGA TAGTGGAAGC CTTGAAGCAA GCCTTGCAAC ATTCTGAAAT
TCCAAACTCT TCTCAAGACA TTGCTGAATC CTCCTCATCC CGGTCTAAAC TGGTCAGAAA AAGTAAACAG TGAGTTTTGT
TTTTTTGGTA GGATCAAGAA CTTGTGGGAA ACTCGGTACT TTAACCATCT CTTCTTATTT ACCATCATCC ACTTGTTCTC
GTCAATTGGA AGTCAATTTT TGGTATTTTT CGTTACTGGT TCGTTTGGCC CAGTTCAAAC AAAACCAAGT CCTTTCTTCC
TTTTGTAAGC TATTAGCTAT AAATACACTT TTTTTTAGGT GAGATTGTAG AAAATTTTCA ATTAATA

[show][hide][copy]CDS

>Vigan.01G369600.01
ATGAAGTGTT TCTTCTTCAA AGACAAGTGT AAATCCGCCC CCGAATTGCA TAAGAAGAAA AACCCCGCCG TGAACCGCGC
CGCGAACTCC ACCGGCTCCC TATCGTCGCC CAAGAGCGTG AAGGACTTGT ACAGAGAGAA AGAGCACAGC TTCAGAGTTT
TCAATTTTCA GGAGCTCAGA GATGCCACCC AAGGTTTCAA TAGGACGCTC AAGCTTGGAG AAGGGGGGTT CGGGAGTGTG
TATAAAGGAT CCATCAGACC CTCCGATGGC CAGGGTGATC CATTTCCAGT AGCTATCAAA AGGCTCAACA CGCGTGGCTT
CCAGGGTCAT AAAGAATGGC TTGCTGAAGT TCAATTTCTT GGCATTGTTA ATCACCCAAA TTTGGTTAAG CTTTTGGGAT
ACTGCTCCAT GGACGGAGAA AGAGGAATCC AACGGCTGCT GGTGTACGAG TTCATGCCCA ACGGGAGCTT GGAGGATCAC
CTCTTCAATA AAAGTTTACC ACCTCTCCCT TGGAAAACAA GATTGGAGAT TATGCTTGGT GCCGCCCAAG GATTAGCTTA
TCTCCATGAA GGACTGGAAA TTCAGGTGAT CTACAGAGAC TTCAAATCTT CAAATGTTCT ATTGGATGCG GATTTCCATC
CAAAGCTCTC AGATTTTGGT CTTGCTAGAG AAGGACCACA AGGCGATCAG ACTCATGTAT CCACTGCGGT GGTTGGGACA
CAGGGGTATG CTGCACCAGA GTACATTGAA ACGGGTCATC TGAAAGTTCA GAGCGACATG TGGAGTTTTG GTGTAGTGCT
GTATGAGATC CTCACAGGAA GAAGATCATT GGAAAGAAAC CGTCCCACTG CAGAACAAAA GCTTCTAGAT TGGGTGAAAC
AGTATCCTGC TGACACCAGC AGGTTCGTGG TGATAATGGA TCCTCGTCTC AGGAACCAGT ATTCTCCCCA AGCAGCTCGC
AAAATAGCCA AGTTGGCTGA TAGCTGCTTA AAGAAGAATC CAGAAGATAG ACCATCCATG AGTCAGATAG TGGAAGCCTT
GAAGCAAGCC TTGCAACATT CTGAAATTCC AAACTCTTCT CAAGACATTG CTGAATCCTC CTCATCCCGG TCTAAACTGG
TCAGAAAAAG TAAACAGTGA

[show][hide][copy]PROTEIN

>Vigan.01G369600.01
MKCFFFKDKC KSAPELHKKK NPAVNRAANS TGSLSSPKSV KDLYREKEHS FRVFNFQELR DATQGFNRTL KLGEGGFGSV
YKGSIRPSDG QGDPFPVAIK RLNTRGFQGH KEWLAEVQFL GIVNHPNLVK LLGYCSMDGE RGIQRLLVYE FMPNGSLEDH
LFNKSLPPLP WKTRLEIMLG AAQGLAYLHE GLEIQVIYRD FKSSNVLLDA DFHPKLSDFG LAREGPQGDQ THVSTAVVGT
QGYAAPEYIE TGHLKVQSDM WSFGVVLYEI LTGRRSLERN RPTAEQKLLD WVKQYPADTS RFVVIMDPRL RNQYSPQAAR
KIAKLADSCL KKNPEDRPSM SQIVEALKQA LQHSEIPNSS QDIAESSSSR SKLVRKSKQ*