GBrowse Details

Vigan.01G370200.01

Basic Information:
Name: Vigan.01G370200.01
Multiple alignment
Variant Information
Position: Chr01:50719602..50722972 (- strand)
Length: 3371
Functional Information:
Description: Similar to Uncharacterized protein. [I1K0X7, Glycine max]
GO: Cellular Component: protein kinase CK2 complex (GO:0005956)
Molecular Function: protein kinase regulator activity (GO:0019887)
InterPro: Casein kinase II, regulatory subunit (IPR000704)
Casein kinase II, regulatory subunit, alpha-helical (IPR016149)
Casein kinase II, regulatory subunit, beta-sheet (IPR016150)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.94,26.52,35.29,27.84,52.61,46.04,42.24,36.69
Automatic updates:
Name: NM_001254452 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative casein kinase II subunit beta (LOC100784848), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:50719602..50720473 (- strand)
Length: 872
Type: three_prime_UTR
Position: Chr01:50720474..50720604 (- strand)
Length: 131
Type: CDS
Position: Chr01:50721536..50721701 (- strand)
Length: 166
Type: CDS
Position: Chr01:50721787..50721896 (- strand)
Length: 110
Type: CDS
Position: Chr01:50722169..50722390 (- strand)
Length: 222
Type: CDS
Position: Chr01:50722542..50722698 (- strand)
Length: 157
Type: CDS
Position: Chr01:50722699..50722972 (- strand)
Length: 274
Type: five_prime_UTR


>Vigan.01G370200.01
CCATAATCTC AGAAAAATAA ATATTGTGAA TTAATTAATG ATAATTAATA GTAATTACGT TGGAAGAGGA AGAGGAGTGG
TATATAGGAA TGGGGTTGCT TAGCTTAAAG TGATAATTAG AACTGTGTTG TGTAGGTAAT CAAAAACCCT AGCCTTCACC
CTTTCAGCCT TTTTTCTTTT CATCTTAGAC CATGTTTGGT TAAGTTCAAT CGTCCCAAGA GAAAGACGAA GAAGAAGAAG
AAGAAGAGAA TTAGGGATAG GGCAGGGATT AGGGATGTAT AAAGAACGAG GAGGTGTTGC CGTCACTGTT TCTGCTTCCA
AATCGGAGGA TCGGAAGCGA ATCAACGACG TTCTCGACAA GCACCTCGAA CGATCCTCGC CCTCCACCTC TCGCCCCATC
AACGCCACCT CCAAAAATTC CAACCTCCAA GCGGAGGAAT CTGAAACGGA GAGTGAAGAG TCCGATGTTA GCGGTTCGGA
TGGAGATGAC ACCTCTTGGA TCTCTTGGTT CTGCAATCTT AGGGGAAACG AGTTCTTTTG CGAGGTCGAT GATGATTACA
TCCAGGATGA CTTCAACCTC TGTGGATTGA GCAGTCAAGT GCCCTACTAT GATTATGCCC TTGATTTGAT TCTCGATATC
GAATCATCCC ACGGTGACAT GTTCACGGAG GAACAGAACG AGTTGATTGA ATCAGCGGCG GAAATGCTTT ACGGTCTGAT
TCATGCCAGA TATGTGTTGA CCAGCAAAGG AATGACTGCT ATGCTTGACA AATACAAGAA CTATGATTTT GGTAGATGTC
CGAGAGTTTA CTGCTCTGGA CAGCCCTGCC TCCCAGTTGG TCAATCAGAC ATTCCTAGGG CGAGTACTGT CAAAATATAC
TGCCCTAGGT GCGAAGATCT TTACTATCCT CGCTCCAAGT ATCAAGGCAA CATTGATGGA GCTTATTTTG GAACAACATT
TCCTCACCTT TTCTTGATGA CATATGGACA ACTGAAGCCA CAGAAACCAT CACAAGGCTA TGTTCCGAGA GTTTTTGGGT
TCAAAGTCCA CAAGCCATAA AGCTGATACT GAAACTTTCA CTAAAGTAAG AATCTGCCCT TGTCCCATTT AACTCTTCCT
CCTTTTGATT CTCATTGCTG CACCCGGCGG ATCATAAGCT TTCTGAACCA GTACAATTTA GGCATCTGTT TTAGGACCGT
GTTGTAAAGA AATATGCAGA CATGTGAAGC AAGTGCTTAG TTTCAGCTAC CGATTCAATG AGCAAGTACG TAGGTACTTG
TCGACACTTT TTTAATGGCC TACAAATTGT ATTCTTGCTA TTAACTTAAA ATTGTCTATG GTTATGCCTC GCATTAGAAC
TATCCTACTA CTTTTATGTC GTTTACCTCA TTTCTGTAGT CTTGGAATTT GTGGATATGA TTTCAATGGA TTCATACATT
ATACTGGTTT TAAAGTTTCC TTGCTTGAAT GTTAAACTCG CCTATACCAT TCCAACATTA ATGTTGATTA TGTGGAAAAT
ATGAATGCAC AATATGACTG ACCTCAAGTA GTGTGCTGTA TTCTGAATAT ATATGACTAC TAACTTGTGA AACCTCTAAT
TATTTGCATA CACTTTCTGT TGAAAAATGA GCTGTTATCT ATTCTTCAAT TCTCATTTAG TTGAATCCCC CAATTCAGTT
CCCTCAACGT GCTACACTGT AGACCAAGAC CCTGTAATCA CAGTTTTGGC TGCTTTGCCT GTTTGGTTCT CGTTATTGTT
CTGATCGTAA AAGTAGCGGA TCAAACTAAG TACTCTTTTA TCGCTTCTAT TACTTGTCCA TAAAGACAGT TCATGCTCAA
TTTGGATGAG CTGGCTATGA GTTGGTTGTT TGTGATAGCA GTTTTCAAAA TGAATAGTTG TAAATCCCAG AACATTTTGA
AAAATGGTAG GC

>Vigan.01G370200.01
ATGTATAAAG AACGAGGAGG TGTTGCCGTC ACTGTTTCTG CTTCCAAATC GGAGGATCGG AAGCGAATCA ACGACGTTCT
CGACAAGCAC CTCGAACGAT CCTCGCCCTC CACCTCTCGC CCCATCAACG CCACCTCCAA AAATTCCAAC CTCCAAGCGG
AGGAATCTGA AACGGAGAGT GAAGAGTCCG ATGTTAGCGG TTCGGATGGA GATGACACCT CTTGGATCTC TTGGTTCTGC
AATCTTAGGG GAAACGAGTT CTTTTGCGAG GTCGATGATG ATTACATCCA GGATGACTTC AACCTCTGTG GATTGAGCAG
TCAAGTGCCC TACTATGATT ATGCCCTTGA TTTGATTCTC GATATCGAAT CATCCCACGG TGACATGTTC ACGGAGGAAC
AGAACGAGTT GATTGAATCA GCGGCGGAAA TGCTTTACGG TCTGATTCAT GCCAGATATG TGTTGACCAG CAAAGGAATG
ACTGCTATGC TTGACAAATA CAAGAACTAT GATTTTGGTA GATGTCCGAG AGTTTACTGC TCTGGACAGC CCTGCCTCCC
AGTTGGTCAA TCAGACATTC CTAGGGCGAG TACTGTCAAA ATATACTGCC CTAGGTGCGA AGATCTTTAC TATCCTCGCT
CCAAGTATCA AGGCAACATT GATGGAGCTT ATTTTGGAAC AACATTTCCT CACCTTTTCT TGATGACATA TGGACAACTG
AAGCCACAGA AACCATCACA AGGCTATGTT CCGAGAGTTT TTGGGTTCAA AGTCCACAAG CCATAA

>Vigan.01G370200.01
MYKERGGVAV TVSASKSEDR KRINDVLDKH LERSSPSTSR PINATSKNSN LQAEESETES EESDVSGSDG DDTSWISWFC
NLRGNEFFCE VDDDYIQDDF NLCGLSSQVP YYDYALDLIL DIESSHGDMF TEEQNELIES AAEMLYGLIH ARYVLTSKGM
TAMLDKYKNY DFGRCPRVYC SGQPCLPVGQ SDIPRASTVK IYCPRCEDLY YPRSKYQGNI DGAYFGTTFP HLFLMTYGQL
KPQKPSQGYV PRVFGFKVHK P*