GBrowse Details

Vigan.01G371300.01

Basic Information:
Name: Vigan.01G371300.01
Multiple alignment
Variant Information
Position: Chr01:50901136..50904331 (+ strand)
Length: 3196
Functional Information:
Description: Similar to Glutamate dehydrogenase. [V7CBZ3, Phaseolus vulgaris]
GO: Biological Process: cellular amino acid metabolic process (GO:0006520)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor (GO:0016639)
InterPro: Glutamate/phenylalanine/leucine/valine dehydrogenase (IPR006095)
Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal (IPR006096)
Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain (IPR006097)
Glutamate dehydrogenase (IPR014362)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.34,8.50,3.93,0.43,0.28,90.91,1.41,1.82
Arabidopsis thaliana homolog: AT3G03910.1, AT5G07440.1, AT5G18170.1
Automatic updates:
Name: NM_001249488 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glutamate dehydrogenase 2 (GDH2), mRNA.
PubMed ID: 25922975 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:50901136..50901221 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr01:50901222..50901329 (+ strand)
Length: 108
Type: CDS
Position: Chr01:50901497..50901610 (+ strand)
Length: 114
Type: CDS
Position: Chr01:50902482..50902703 (+ strand)
Length: 222
Type: CDS
Position: Chr01:50902778..50902852 (+ strand)
Length: 75
Type: CDS
Position: Chr01:50902952..50903068 (+ strand)
Length: 117
Type: CDS
Position: Chr01:50903159..50903412 (+ strand)
Length: 254
Type: CDS
Position: Chr01:50903578..50903653 (+ strand)
Length: 76
Type: CDS
Position: Chr01:50903727..50903813 (+ strand)
Length: 87
Type: CDS
Position: Chr01:50903903..50904088 (+ strand)
Length: 186
Type: CDS
Position: Chr01:50904089..50904331 (+ strand)
Length: 243
Type: three_prime_UTR


>Vigan.01G371300.01
ATAGCATTCT CTTCTTCACT TTAGTTGAGT GACACTTGAC TCATTCAGTG ACTCACATCT CTCTTTTGCA TTCTCTCCTT
GCAACCATGA ATGCTCTAGC CGCCACCAAC CGCAACTTTC AACGTGCAGC TCGCATTCTC GGCTTGGATT CCAAGCTTGA
GAAGAGTCTT CTCATACCCT TCAGAGAAAT CAAGGTTGAA TGCACCATCC CGAAAGATGA TGGAACTCTG GTTTCTTATG
TGGGATTCAG AATCCAACAT GATAATGCTC GTGGTCCAAT GAAAGGAGGG ATTAGATATC ATCCAGAGGT TGACCCAGAT
GAAGTGAATG CTCTAGCTCA GTTGATGACA TGGAAGACAG CTGTTGCAGA CATTCCCTAC GGAGGAGCAA AAGGTGGGAT
TGGCTGCAAC CCTAGAGATC TGAGTATTAG TGAGTTAGAA CGTCTTACTC GGGTTTTCAC TCAGAAGATT CATGATCTCA
TCGGTGTTCA AAGGGATGTT CCTGCCCCAG ATATGGGAAC TAATGCCCAG ACCATGGCAT GGATTCTTGA TGAGTATTCA
AAGTTTCATG GTCATTCACC AGCTGTTGTG ACTGGGAAGC CTATTGATCT TGGAGGATCA TTGGGAAGGG AGGCTGCCAC
AGGTCTTGGA GTAGTTTTTG CAACTGAAGC CTTGTTTGCT GAATATGGGA AGTCCATTGC TGATCACACA TTTGTTATCC
AGGGGTTTGG AAATGTGGGC ACATGGGCTG CTAAGTCTAT TTATGAGAGA GGAGGAAAGG TGATTGCTAT CAGTGATATC
AGTGGTGCTA TCAAAAACAC AAATGGAATA GACATCCCTG CTCTGTTGAA ATACAAGGAT GAGGGCAATG GAACCCTGAA
GGACTTTCCA GGTGCGGAAG TGATGGATCC AAATGAGTTG CTTGTTCACG AATGCGACGT GCTTATCCCT TGTGCATTGG
GAGGAGTTCT AAATAGGGAA AATGCTTCTG ACGTGAAGGC TAAATTTATA ATAGAAGCAG CAAACCATCC CACTGACCCT
GAAGCGGATG AGATTTTGTC TAAGAAAGGA GTCATCATAT TACCTGACAT CTATGCCAAT GCTGGTGGAG TGACTGTGAG
TTACTTTGAA TGGGTTCAGA ATATTCAAGG TTTCATGTGG GATGAGGAAA AGGTGAATCA TGAGTTGAAG AAATACATGA
CCAGATCTTT CCAAGACATC AAGGCAATGT GCAAGATTCA TAACTGTGAC TTGCGAATGG GAGCCTTCAC TCTTGGAGTG
AACCGTGTTG CTCGTGCTAC TCTTCTCAGA GGTTGGGAAG CTTAGGTTCT GAACCTACAA GAGTAGGATT TTATATGGCT
GTGATTTCTT TAATCTAGGT TTAGTCTAGG TTTAGTTAGT CAAGTAAAAG GCATTAGAGA CTTGCCAATA AAACATTATT
CTCGCCATTT GGTCTGTCCA ATGTGTATGG TTCTTGTCAT TTGGTGTTTG ATAATGCCAT AGTTACAGCC ATATTTGTTT
CAAATGTTCT AGTTGTTCTA GTTGTTCTAG TTTGATGTAT TAGTGGAT

>Vigan.01G371300.01
ATGAATGCTC TAGCCGCCAC CAACCGCAAC TTTCAACGTG CAGCTCGCAT TCTCGGCTTG GATTCCAAGC TTGAGAAGAG
TCTTCTCATA CCCTTCAGAG AAATCAAGGT TGAATGCACC ATCCCGAAAG ATGATGGAAC TCTGGTTTCT TATGTGGGAT
TCAGAATCCA ACATGATAAT GCTCGTGGTC CAATGAAAGG AGGGATTAGA TATCATCCAG AGGTTGACCC AGATGAAGTG
AATGCTCTAG CTCAGTTGAT GACATGGAAG ACAGCTGTTG CAGACATTCC CTACGGAGGA GCAAAAGGTG GGATTGGCTG
CAACCCTAGA GATCTGAGTA TTAGTGAGTT AGAACGTCTT ACTCGGGTTT TCACTCAGAA GATTCATGAT CTCATCGGTG
TTCAAAGGGA TGTTCCTGCC CCAGATATGG GAACTAATGC CCAGACCATG GCATGGATTC TTGATGAGTA TTCAAAGTTT
CATGGTCATT CACCAGCTGT TGTGACTGGG AAGCCTATTG ATCTTGGAGG ATCATTGGGA AGGGAGGCTG CCACAGGTCT
TGGAGTAGTT TTTGCAACTG AAGCCTTGTT TGCTGAATAT GGGAAGTCCA TTGCTGATCA CACATTTGTT ATCCAGGGGT
TTGGAAATGT GGGCACATGG GCTGCTAAGT CTATTTATGA GAGAGGAGGA AAGGTGATTG CTATCAGTGA TATCAGTGGT
GCTATCAAAA ACACAAATGG AATAGACATC CCTGCTCTGT TGAAATACAA GGATGAGGGC AATGGAACCC TGAAGGACTT
TCCAGGTGCG GAAGTGATGG ATCCAAATGA GTTGCTTGTT CACGAATGCG ACGTGCTTAT CCCTTGTGCA TTGGGAGGAG
TTCTAAATAG GGAAAATGCT TCTGACGTGA AGGCTAAATT TATAATAGAA GCAGCAAACC ATCCCACTGA CCCTGAAGCG
GATGAGATTT TGTCTAAGAA AGGAGTCATC ATATTACCTG ACATCTATGC CAATGCTGGT GGAGTGACTG TGAGTTACTT
TGAATGGGTT CAGAATATTC AAGGTTTCAT GTGGGATGAG GAAAAGGTGA ATCATGAGTT GAAGAAATAC ATGACCAGAT
CTTTCCAAGA CATCAAGGCA ATGTGCAAGA TTCATAACTG TGACTTGCGA ATGGGAGCCT TCACTCTTGG AGTGAACCGT
GTTGCTCGTG CTACTCTTCT CAGAGGTTGG GAAGCTTAG

>Vigan.01G371300.01
MNALAATNRN FQRAARILGL DSKLEKSLLI PFREIKVECT IPKDDGTLVS YVGFRIQHDN ARGPMKGGIR YHPEVDPDEV
NALAQLMTWK TAVADIPYGG AKGGIGCNPR DLSISELERL TRVFTQKIHD LIGVQRDVPA PDMGTNAQTM AWILDEYSKF
HGHSPAVVTG KPIDLGGSLG REAATGLGVV FATEALFAEY GKSIADHTFV IQGFGNVGTW AAKSIYERGG KVIAISDISG
AIKNTNGIDI PALLKYKDEG NGTLKDFPGA EVMDPNELLV HECDVLIPCA LGGVLNRENA SDVKAKFIIE AANHPTDPEA
DEILSKKGVI ILPDIYANAG GVTVSYFEWV QNIQGFMWDE EKVNHELKKY MTRSFQDIKA MCKIHNCDLR MGAFTLGVNR
VARATLLRGW EA*