GBrowse Details

Vigan.01G371500.01

Basic Information:
Name: Vigan.01G371500.01
Multiple alignment
Variant Information
Position: Chr01:50911922..50920075 (+ strand)
Length: 8154
Functional Information:
Description: Similar to ATP-dependent Clp protease proteolytic subunit. [V7CEM3, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Molecular Function: serine-type endopeptidase activity (GO:0004252)
InterPro: ClpP (IPR001907)
Clp protease proteolytic subunit /Translocation-enhancing protein TepA (IPR023562)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.34,18.29,12.26,29.20,13.20,9.91,8.23,11.45
Arabidopsis thaliana homolog: AT4G17040.1
Automatic updates:
Name: NM_001254196 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like (LOC100785827), transcript variant 1, mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001414721 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like (LOC100785827), transcript variant 2, mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:50911922..50911952 (+ strand)
Length: 31
Type: five_prime_UTR
Position: Chr01:50911953..50912216 (+ strand)
Length: 264
Type: CDS
Position: Chr01:50913669..50913872 (+ strand)
Length: 204
Type: CDS
Position: Chr01:50915386..50915441 (+ strand)
Length: 56
Type: CDS
Position: Chr01:50917261..50917387 (+ strand)
Length: 127
Type: CDS
Position: Chr01:50917783..50917860 (+ strand)
Length: 78
Type: CDS
Position: Chr01:50918230..50918343 (+ strand)
Length: 114
Type: CDS
Position: Chr01:50918415..50918486 (+ strand)
Length: 72
Type: CDS
Position: Chr01:50918487..50920075 (+ strand)
Length: 1589
Type: three_prime_UTR


>Vigan.01G371500.01
TTTTCTTCTT TCACGTAGTG GCTCACTCAC CATGGAGGTT GCCTCAACTG CTTCTAGCTT CGCACTCAAC AAGCCAATTA
TGGCATTGCC GTCTTCGTCT CGAACCGTAA CCCCTATTCG AGCCATGAGT TCGTCGACCT CCTCCGTCAG GACATCTCTC
TCCACCAATT TCATTGCTCC TCCTGCCTTA ATCAGCAGCG CCTCTAGCCA TTTCTCCGGC TACAAGCTCC GACCATCCTC
CCTCAACCCG GCTTCATTTG GTGGCTCCAA CGCCAAGCGA GGCGTCATTA CTATGGTTAT TCCATATTCA AGTGGGAGTG
CATTTGAACA ACCTCCACCG GACTTGGCTT CTTACTTGTA CAAAAACCGA ATTGTTTACT TGGGCATGTC TCTTGTTCCA
TCTGTTACTG AGTTGATTCT AGCAGAATTT CTTTACCTTC AATATGAAGA TGATGATAAG CCTATCTACC TCTACATAAA
CTCCACTGGG ACAACTAAGG GAGGTGAGAA GTTGGGTTAT GAGACTGAGG CCTTTGCAAT TTATGATGTG ATGAGGTATG
TCAAGACTCC TATTTTCACT CTTTGTGTTG GTAATGCTTG GGGAGAAGCA GCATTGCTTT TGGCTTCAGG TGCAAAGGGA
AACCGCTCTG CTTTGCCATC ATCAACAATA ATGTTAAGAC AGCCAATTGC AAGGTTTCAA GGTCAAGCAA CAGATGTTAA
CCTTGCAAGA AGAGAAGTCA ATAATGTGAA GGCAGAATTA GTTAAATTGT ATGCAAAGCA TATGGAAAAA ACACCTGAGC
AGATTGAAAA TGATATTCAG CGTCCAAAGT ATTTTAGCCC CAGTGAAGCT GTTGAGTATG GTATCATAGA CAAGGTTATA
TACAATGATA GGGGGTCTGA GGATCGTGGA GTTGTTTCTG ATCTTAAAAA GGCACGGCTT ATTTGACAGT TGGGATTTGA
ATTGCAATTT TCTCGGAGTT CAGGTAAAGC ACATCTCAAG TTATTATTGT ATTAAACAGT TGTTGCAACT TCAAAATTGA
TTTAGTTTAT TGTTATCTTA GAAGAAGATT AACTGTACCC TTTTTAGCAA CAACTCTTTT TTAAATCTTA TGGTTCTTTG
CTATTATTTT GATGGGTTGT TTGTGATGCT CAGAAATTAA ATGCTCGTAA ATCTTGCATT GATCAATTAA GTAATCACCC
ATGGCTATAA TATTTTCCGT TTACACTTGG CTTTACGCTT CTGGTGTTTG CCACCGCAAA ACAAGTAATG GTCTAGCGTT
GTCCAATGAT TGCGCCAAGC ACGAGTTAGT GCTTCATATT TTGTGTAGAA AGGAGCCCCA AAGCCCTTTA TTTGAACCTT
TTTGGGAGTA TAATGCATGC TCTCAATTAG TTTTTCACTT CGATGAGCTA AATAGTAAGC TTTGATTGAC AGCGACATCC
ACAACCTCTG TAGTTTCTAT TATATTCCAC TACTAAGTGC AAACATAAAA TTAAGGGAAC GATTACTTTT TCATGTCCAT
ACACCCGTGC AAAATGTTTT CCCCTCTTCC TACCTCCAAA ATATTAACAA ATATATTGGA ACGGATGAAG ATCCTCTACA
ATAAGAGAAT AACTCTGAAT AAATATAAAC CATGAAAATG CTTTATTTTA CAACGAATAA TTTGAAATAT TAGATGTAAT
CTGTCGGATT TGAACTGCAT GATGGTGTAG TTACTTCTGA CTAGAGAATC CTAATCCTAG GAGAAGGGAC ATGTATGCTC
ATGCTAAGGT TTCTGCTTGG GCTGTTTGGT ATACTTGTTC ATATCGTGCA TTTTCATGAA TTGCCATTAG AGTCAAGATT
AAGACTCTGA TTAAATTGGT GAATAGGCAC TTTTGTATTT GGCCGGATTT AGTTTCATCT TGTTAGTTGG CTTGCTTCAC
AACACGCGTT GAAGACACAT GTAAGGGAGA CACAGGAATA CCCCACTCGC ACATTTGCTG GTCCGTTGGT CTCTTGGTTA
TGTATTTTTA TGCATTATCT AATTTAAGTG GCTTTGATGG AGTATTGTCA AAATTGATGA CCATTATAGA GATTCGACTT
TTTTGTTTTT TAAAACATGA TTCCATTTGT TTCCTTTTTT GGCATTGATA CAGTAAGTAT GTAGCAAAAA TTGTGATTGT
TTTCTTGTCT ACAGGAATTT GTGTGGAAAT GGTAGTTTTT GTGGATTCCT TATTTTCTTG GATATGATGT TTTGTATTCT
TAATAAAATA TTTCTTGTAA TGGAAGTAGA TCAGCTGAAA TGGAAGAAGA TCGGCAATGA AATTGGGCAA CCATGCCAAG
CAAGTAGCGG ATGTTGTAGT ATGAATTGTT AATACCATAG GATCATATTT CTCTTCCCAA AAATAGGCTG AAGGATCTAT
CACTACTTGT TTTCTAATAT GTTGTAGACA TGACTGTATT CTGGTTCATT CTAATTCAAA ACGGTTTTTG TATGTCAGTA
CCAGCAGAAC GAAACTTGAT TACAGTTAAT GCCAATGTTT AGCAATTTTG AAGAA

>Vigan.01G371500.01
ATGGAGGTTG CCTCAACTGC TTCTAGCTTC GCACTCAACA AGCCAATTAT GGCATTGCCG TCTTCGTCTC GAACCGTAAC
CCCTATTCGA GCCATGAGTT CGTCGACCTC CTCCGTCAGG ACATCTCTCT CCACCAATTT CATTGCTCCT CCTGCCTTAA
TCAGCAGCGC CTCTAGCCAT TTCTCCGGCT ACAAGCTCCG ACCATCCTCC CTCAACCCGG CTTCATTTGG TGGCTCCAAC
GCCAAGCGAG GCGTCATTAC TATGGTTATT CCATATTCAA GTGGGAGTGC ATTTGAACAA CCTCCACCGG ACTTGGCTTC
TTACTTGTAC AAAAACCGAA TTGTTTACTT GGGCATGTCT CTTGTTCCAT CTGTTACTGA GTTGATTCTA GCAGAATTTC
TTTACCTTCA ATATGAAGAT GATGATAAGC CTATCTACCT CTACATAAAC TCCACTGGGA CAACTAAGGG AGGTGAGAAG
TTGGGTTATG AGACTGAGGC CTTTGCAATT TATGATGTGA TGAGGTATGT CAAGACTCCT ATTTTCACTC TTTGTGTTGG
TAATGCTTGG GGAGAAGCAG CATTGCTTTT GGCTTCAGGT GCAAAGGGAA ACCGCTCTGC TTTGCCATCA TCAACAATAA
TGTTAAGACA GCCAATTGCA AGGTTTCAAG GTCAAGCAAC AGATGTTAAC CTTGCAAGAA GAGAAGTCAA TAATGTGAAG
GCAGAATTAG TTAAATTGTA TGCAAAGCAT ATGGAAAAAA CACCTGAGCA GATTGAAAAT GATATTCAGC GTCCAAAGTA
TTTTAGCCCC AGTGAAGCTG TTGAGTATGG TATCATAGAC AAGGTTATAT ACAATGATAG GGGGTCTGAG GATCGTGGAG
TTGTTTCTGA TCTTAAAAAG GCACGGCTTA TTTGA

>Vigan.01G371500.01
MEVASTASSF ALNKPIMALP SSSRTVTPIR AMSSSTSSVR TSLSTNFIAP PALISSASSH FSGYKLRPSS LNPASFGGSN
AKRGVITMVI PYSSGSAFEQ PPPDLASYLY KNRIVYLGMS LVPSVTELIL AEFLYLQYED DDKPIYLYIN STGTTKGGEK
LGYETEAFAI YDVMRYVKTP IFTLCVGNAW GEAALLLASG AKGNRSALPS STIMLRQPIA RFQGQATDVN LARREVNNVK
AELVKLYAKH MEKTPEQIEN DIQRPKYFSP SEAVEYGIID KVIYNDRGSE DRGVVSDLKK ARLI*