GBrowse Details

Vigan.01G373400.01

Basic Information:
Name: Vigan.01G373400.01
Multiple alignment
Variant Information
Position: Chr01:51138665..51147260 (+ strand)
Length: 8596
Functional Information:
Description: Similar to Uncharacterized protein. [C6T574, Glycine max]
GO: Biological Process: ubiquitin-dependent protein catabolic process (GO:0006511)
Cellular Component: intracellular (GO:0005622)
Molecular Function: ubiquitin thiolesterase activity (GO:0004221)
InterPro: Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 (IPR001578)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.35,27.35,27.85,18.09,35.65,29.19,11.95,22.64
Arabidopsis thaliana homolog: AT4G17510.1
Automatic updates:
Name: BT092586 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11E10 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255682 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin carboxyl-terminal hydrolase isozyme L3-like (LOC100816564), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:51138665..51138715 (+ strand)
Length: 51
Type: five_prime_UTR
Position: Chr01:51138716..51138790 (+ strand)
Length: 75
Type: CDS
Position: Chr01:51138988..51139119 (+ strand)
Length: 132
Type: CDS
Position: Chr01:51139239..51139277 (+ strand)
Length: 39
Type: CDS
Position: Chr01:51139552..51139657 (+ strand)
Length: 106
Type: CDS
Position: Chr01:51139748..51139806 (+ strand)
Length: 59
Type: CDS
Position: Chr01:51139913..51139987 (+ strand)
Length: 75
Type: CDS
Position: Chr01:51141411..51141459 (+ strand)
Length: 49
Type: CDS
Position: Chr01:51141694..51141770 (+ strand)
Length: 77
Type: CDS
Position: Chr01:51146810..51146908 (+ strand)
Length: 99
Type: CDS
Position: Chr01:51146909..51147260 (+ strand)
Length: 352
Type: three_prime_UTR


>Vigan.01G373400.01
AGAGTGAGTC GAAGAGAATA ACATAAAGAA ACTAGAAAGA AAGAAATTAG AATGGCCACC TTAGACGAAC GCCCATCTGC
GAAAAGGTGG CTTCCTCTTG AAGCTAACCC AGATGTCATG AACCAGTTCC TCTGGGGTCT TGGCCTTCCA ATGGAAGAGG
CAGAGTGTTG TGATGTTTTT GGCTTGGATG AAGAGCTTCT GGAAATGGTT CCGAAGCCAG TTCTTGCTGT GCTTTTTCTT
TATCCCATTA CCGCAAAGAC TGAAGAAGAA AGGTTGCAAC AGGAAAATGA AAAAAAGGAT TATAGCAGTA AAGTGTACTT
TATGAAGCAA ACCGTGGGTA ATGCTTGTGG TACGATAGGT CTGCTTCATG CACTTGGGAA CATAACTTCT GAAGTCAAGC
TTGTTGAGGG GTCCTTTTTT GACAAGTTCT TTAAATCTAC TGCCAGCATG GATCCATTGC AGCGGGCTGC CTTTCTCGAG
AATGACAGGG AGATGGAAGT TGCTCATTCA GTAGCAGCCA CTGCTGGCGA CACAGTGGCA TCAGATAATG TGGACACTCA
TTTCATCGCC TTTGCCTGTG TGGATGGTCA ACTGTATGAG CTTGATGGAA GAAAGTCAGG ACCAATATCT CATGGTGTAT
CATCACCAAG TACTTTGTTG AAGGATGCAG CTAAAGTGAT CCAGAGCATG ATCCAGAAAA ATCCAGATTC CCTCAATTTC
AATGTCATTG CAATATCAAA GAAATCCGGG GATGGACATT AAGGTAGTTT AATTTGGGTG AAGCAGCTCT TGATGTCATC
TGCTTTATAA TCTTCAGTAA TCTGCAGCTT TATTCACTTT GATTTTATTT ACGTTTTTTT TTTTCATTCG GACGCCCATC
AAGTTGAGCA TCTTTCGTTT CAAATAGATG ATGCAGTGCG AGTAAATTTT ATCTTAAAAA ACAAACTTTG ACATTGAAGC
TGTGTTTTTT CTGGCGTTTC GATTTTTCAG ATTTTTCTTA AAATAAGCGT AATGGCAGTG ACAAAAATTT TGAGACCAAA
TTTTAGAATA GGATGGCTTA ACAAATTGTT GTTCCGGCCC TAAAAAAGAA TCTGTGGCCC AAATTTTAGA ATAG

>Vigan.01G373400.01
ATGGCCACCT TAGACGAACG CCCATCTGCG AAAAGGTGGC TTCCTCTTGA AGCTAACCCA GATGTCATGA ACCAGTTCCT
CTGGGGTCTT GGCCTTCCAA TGGAAGAGGC AGAGTGTTGT GATGTTTTTG GCTTGGATGA AGAGCTTCTG GAAATGGTTC
CGAAGCCAGT TCTTGCTGTG CTTTTTCTTT ATCCCATTAC CGCAAAGACT GAAGAAGAAA GGTTGCAACA GGAAAATGAA
AAAAAGGATT ATAGCAGTAA AGTGTACTTT ATGAAGCAAA CCGTGGGTAA TGCTTGTGGT ACGATAGGTC TGCTTCATGC
ACTTGGGAAC ATAACTTCTG AAGTCAAGCT TGTTGAGGGG TCCTTTTTTG ACAAGTTCTT TAAATCTACT GCCAGCATGG
ATCCATTGCA GCGGGCTGCC TTTCTCGAGA ATGACAGGGA GATGGAAGTT GCTCATTCAG TAGCAGCCAC TGCTGGCGAC
ACAGTGGCAT CAGATAATGT GGACACTCAT TTCATCGCCT TTGCCTGTGT GGATGGTCAA CTGTATGAGC TTGATGGAAG
AAAGTCAGGA CCAATATCTC ATGGTGTATC ATCACCAAGT ACTTTGTTGA AGGATGCAGC TAAAGTGATC CAGAGCATGA
TCCAGAAAAA TCCAGATTCC CTCAATTTCA ATGTCATTGC AATATCAAAG AAATCCGGGG ATGGACATTA A

>Vigan.01G373400.01
MATLDERPSA KRWLPLEANP DVMNQFLWGL GLPMEEAECC DVFGLDEELL EMVPKPVLAV LFLYPITAKT EEERLQQENE
KKDYSSKVYF MKQTVGNACG TIGLLHALGN ITSEVKLVEG SFFDKFFKST ASMDPLQRAA FLENDREMEV AHSVAATAGD
TVASDNVDTH FIAFACVDGQ LYELDGRKSG PISHGVSSPS TLLKDAAKVI QSMIQKNPDS LNFNVIAISK KSGDGH*