GBrowse Details

Vigan.01G374800.01

Basic Information:
Name: Vigan.01G374800.01
Multiple alignment
Variant Information
Position: Chr01:51349804..51355883 (+ strand)
Length: 6080
Functional Information:
Description: Similar to MYB transcription factor. [T2DNE9, Phaseolus vulgaris]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:511.53,386.45,59.16,56.80,32.99,145.89,104.92,32.78
Arabidopsis thaliana homolog: AT5G47390.1
Automatic updates:
Name: KT031272 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_94 MYB/HD-like transcription factor (Glyma17g15330.1_like1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031273 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_95 MYB/HD-like transcription factor (Glyma17g15330.1_like2) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001250591 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB93 (MYB93), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251693 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB180 (MYB180), mRNA.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:51349804..51350001 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr01:51350002..51350290 (+ strand)
Length: 289
Type: CDS
Position: Chr01:51354172..51354380 (+ strand)
Length: 209
Type: CDS
Position: Chr01:51354820..51355323 (+ strand)
Length: 504
Type: CDS
Position: Chr01:51355324..51355883 (+ strand)
Length: 560
Type: three_prime_UTR


>Vigan.01G374800.01
TGCGAAAGCC GAGGGAGACC GTAACAAAAA ACATTACATA ACCCAAAACA AACACATCAC AATACCTATT CCCTCTTACC
ACACCTAAAT AACCTTAAAA CTCCCATTTC ATGTCTCGGA TCCCGTGATT CGGATCCCCC AAGACCCGCT CCCACAATCT
CGTACTTTCC TTTCGGCCGA TCCGGTTGGG AACGCGCCAT GACCCGACGT TGCTCCCATT GCAGCCACAA TGGGCACAAT
TCCAGGACCT GCCCCAATCG TGGAGTTAAG CTGTTCGGAG TCCGATTAAC CGACGGGTCG ATCCGGAAGA GTGCTAGTAT
GGGTAATCTC ACCCATTATG CTGGTTCCGG GTCCGGACCT CTCCATGCGG GGTCAAACAA TCCGGGTTCT CCTGGTGAAA
CCCCCGATCA CGCTACCGCG GCCGATGGTT ACGCCTCCGA GGACTTTGTT CCCGGTTCTT CTTCGAGCTC CCGTGAAAGA
AAGAAGGGTG TTCCGTGGAC TGAGGAGGAA CATAGAATGT TTTTACTCGG ATTGCAGAAG CTGGGCAAAG GTGATTGGCG
TGGAATTGCA AGGAACTATG TTATATCAAG GACACCTACT CAAGTGGCTA GTCATGCACA AAAGTATTTC ATCAGGCAAA
GCAATGTGTC CAGGCGGAAA AGACGGTCCA GCTTGTTTGA TATTGTTGCA GATGAAGCAG CTGACACTGC AATGGTACAG
CAAGACTTCT TGTCAGCTAA TCAGTTACCG GTTGAAACAG AAGGCAATAA CTCCTTGCCT GCGCCTCCTC CCCTCGACGA
AGAGTGTGAA TCCATGGATT CCACAAACTC AAATGATGGA GAACCTGCCC CATCAAAGCC TGAAAACACA CAATCATCTT
ATCCAGTTTT ATATCCTGCA TACTATTCTC CAGTGTTCCC ATTTCCTCTG CCCTATTGGT CAGGATACAA TCCAGAGCCC
GCCAAGATGG AGACGCATGA AGTGCTGAAG CCAACTGCAG TACATTCTAA AAGCCCAATC AATGTTGATG AACTGGTTGG
CATCTCAAAA CTGAGTCTAG GGGAGTCTAT TGGTGATTCA GGCCCCTCCT CCCTGTCTCT TAAACTTCTT GAAGAAGGAC
CCTCGAGACA GTCAGCTTTC CATGCAACAC CAACATGTGG TAGTTCAAAT ATGAATGGCA GTGCCATCCA TGCAGTTTAA
GGGTGTTCCT CGTCTTCCGA GGAAAGGATT GTTATGTAAG CATTACCGTT CAATGCCGGC CTCATGAATG TGGTCTTGTG
TTCATCATAC ATCTGTTTGT GGGGTAACTT AAATAATTTT TTCTTTGTCC ATTCACAATG ATTAACCTAG TTTCTTTATT
TGCTGATAGG CAGGTCTAGG AGTTACTTGG GTTCTAAACT AAAACTTTAT GTTTGTTTAG TGATTTCATT TGTCAGGGTT
ATGTAAAGTT AAGGTTTGAT TGTGCAGTTT GACAATGTAC CAAGTTGTGC TAAATGTTTT CAAGTGCTGG ATTAGAATGT
TTGAAGTGCT TTACCTGATC AAACCGGTCT CTCCTGAATT AACAGAGTGA GACAGAAAAT GAAGAGCACA AATTGTAGTT
ACTTGGTAGG GCTTGAAATG GGTTGAGATA AGTTAAACTC ACTTTGAATA AGCTTATTTG TTCCTTAAAT ATAAATTATC
TAATGCATGA CTCTGGTCTA TTTGATATGG GTTGTCTAAC TTACTAAAAA GTGGGGTCAA ATAACTAAAT CATACTGGTG


>Vigan.01G374800.01
ATGACCCGAC GTTGCTCCCA TTGCAGCCAC AATGGGCACA ATTCCAGGAC CTGCCCCAAT CGTGGAGTTA AGCTGTTCGG
AGTCCGATTA ACCGACGGGT CGATCCGGAA GAGTGCTAGT ATGGGTAATC TCACCCATTA TGCTGGTTCC GGGTCCGGAC
CTCTCCATGC GGGGTCAAAC AATCCGGGTT CTCCTGGTGA AACCCCCGAT CACGCTACCG CGGCCGATGG TTACGCCTCC
GAGGACTTTG TTCCCGGTTC TTCTTCGAGC TCCCGTGAAA GAAAGAAGGG TGTTCCGTGG ACTGAGGAGG AACATAGAAT
GTTTTTACTC GGATTGCAGA AGCTGGGCAA AGGTGATTGG CGTGGAATTG CAAGGAACTA TGTTATATCA AGGACACCTA
CTCAAGTGGC TAGTCATGCA CAAAAGTATT TCATCAGGCA AAGCAATGTG TCCAGGCGGA AAAGACGGTC CAGCTTGTTT
GATATTGTTG CAGATGAAGC AGCTGACACT GCAATGGTAC AGCAAGACTT CTTGTCAGCT AATCAGTTAC CGGTTGAAAC
AGAAGGCAAT AACTCCTTGC CTGCGCCTCC TCCCCTCGAC GAAGAGTGTG AATCCATGGA TTCCACAAAC TCAAATGATG
GAGAACCTGC CCCATCAAAG CCTGAAAACA CACAATCATC TTATCCAGTT TTATATCCTG CATACTATTC TCCAGTGTTC
CCATTTCCTC TGCCCTATTG GTCAGGATAC AATCCAGAGC CCGCCAAGAT GGAGACGCAT GAAGTGCTGA AGCCAACTGC
AGTACATTCT AAAAGCCCAA TCAATGTTGA TGAACTGGTT GGCATCTCAA AACTGAGTCT AGGGGAGTCT ATTGGTGATT
CAGGCCCCTC CTCCCTGTCT CTTAAACTTC TTGAAGAAGG ACCCTCGAGA CAGTCAGCTT TCCATGCAAC ACCAACATGT
GGTAGTTCAA ATATGAATGG CAGTGCCATC CATGCAGTTT AA

>Vigan.01G374800.01
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLTHYAGS GSGPLHAGSN NPGSPGETPD HATAADGYAS
EDFVPGSSSS SRERKKGVPW TEEEHRMFLL GLQKLGKGDW RGIARNYVIS RTPTQVASHA QKYFIRQSNV SRRKRRSSLF
DIVADEAADT AMVQQDFLSA NQLPVETEGN NSLPAPPPLD EECESMDSTN SNDGEPAPSK PENTQSSYPV LYPAYYSPVF
PFPLPYWSGY NPEPAKMETH EVLKPTAVHS KSPINVDELV GISKLSLGES IGDSGPSSLS LKLLEEGPSR QSAFHATPTC
GSSNMNGSAI HAV*