GBrowse Details

Vigan.01G375000.01

Basic Information:
Name: Vigan.01G375000.01
Multiple alignment
Variant Information
Position: Chr01:51359949..51373313 (+ strand)
Length: 13365
Functional Information:
Description: Similar to Acyl-coenzyme A oxidase. [Q945U3, Glycine max]
GO: Biological Process: fatty acid metabolic process (GO:0006631)
Biological Process: fatty acid beta-oxidation (GO:0006635)
Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: peroxisome (GO:0005777)
Molecular Function: acyl-CoA dehydrogenase activity (GO:0003995)
Molecular Function: acyl-CoA oxidase activity (GO:0003997)
Molecular Function: oxidoreductase activity, acting on the CH-CH group of donors (GO:0016627)
Molecular Function: flavin adenine dinucleotide binding (GO:0050660)
InterPro: Acyl-CoA oxidase, C-terminal (IPR002655)
Acyl-CoA oxidase/dehydrogenase, central domain (IPR006091)
Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075)
Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain (IPR009100)
Acyl-CoA oxidase (IPR012258)
Acyl-CoA dehydrogenase/oxidase, N-terminal (IPR013786)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.71,7.39,36.41,16.39,20.98,22.43,25.52,24.79
Arabidopsis thaliana homolog: AT2G35690.1, AT4G16760.1
Automatic updates:
Name: NM_001248635 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max acyl-CoA oxidase (ACX1;2), mRNA.
PubMed ID: 11669577 NCBI(pubmed)
Status: Known Variant
Name: NM_001417282 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula peroxisomal acyl-coenzyme A oxidase 1 (LOC11407818), mRNA.
PubMed ID: 31837401 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:51359949..51360172 (+ strand)
Length: 224
Type: five_prime_UTR
Position: Chr01:51360173..51360313 (+ strand)
Length: 141
Type: CDS
Position: Chr01:51360883..51360991 (+ strand)
Length: 109
Type: CDS
Position: Chr01:51361077..51361138 (+ strand)
Length: 62
Type: CDS
Position: Chr01:51361248..51361457 (+ strand)
Length: 210
Type: CDS
Position: Chr01:51361706..51361793 (+ strand)
Length: 88
Type: CDS
Position: Chr01:51361871..51362033 (+ strand)
Length: 163
Type: CDS
Position: Chr01:51367266..51367464 (+ strand)
Length: 199
Type: CDS
Position: Chr01:51368236..51368433 (+ strand)
Length: 198
Type: CDS
Position: Chr01:51369115..51369246 (+ strand)
Length: 132
Type: CDS
Position: Chr01:51369728..51369848 (+ strand)
Length: 121
Type: CDS
Position: Chr01:51372174..51372284 (+ strand)
Length: 111
Type: CDS
Position: Chr01:51372482..51372551 (+ strand)
Length: 70
Type: CDS
Position: Chr01:51372734..51372917 (+ strand)
Length: 184
Type: CDS
Position: Chr01:51372991..51373200 (+ strand)
Length: 210
Type: CDS
Position: Chr01:51373201..51373313 (+ strand)
Length: 113
Type: three_prime_UTR


>Vigan.01G375000.01
TAGGAAGAAA CGTTATTCAT GACACTTGGC TGTTGGGGCC GATAAAGTGC AATCAGAGGA GTAAATGTTT CAATCATAAT
AATATCATTC ACTCTCCAAA CTAACACGAA GAAAGTAGGT TACTTTCATT AGCGATTTAA ACAAACGCAA CCACCGTGAT
TTGAAATCGA ACGGAAGAGA CTGATTTAGG TTTTCTCATC GGGAGAGAAA AGAAGAAGAA GAAAATGGAA GGCGTCGTTG
ATCACTTGGC TTTCGAGCGG AACAAGACGC AATTCGATGT CGAAGAAATG AAGATCGTTT GGGCTGGTTC TCGCCACGCT
CTTGAAGTCT CCGATAAAAT GGCTCGTCTC GTTGCCAGCG ATCCGGCGTT CAGAAAGGAT GATAGACCCA TGCTTGGTAG
GAAGGAGTTA TTTAAGAACA CTTTGAAAAA AGCAGTTTAT GCGTGGAAAA GGATTATCGA GCTCCGTCTT ACTGAAGAGG
AAGCTGCTAT GCTCAGAACT TTTGTGGACC AACCTGCTTT TACGGATCTA CATTGGGGAA TGTTTATTCC TGCTATCAAA
GGACAAGGAA CCGAGGAACA GCAGCAAAAG TGGTTGCCTT TGGCTCAAAG GATGCAAATA ATTGGATGCT ATGCCCAAAC
TGAACTGGGC CATGGATCTA ATGTTCAAGG GCTAGAAACA ACTGCAACCT TTGATCCCAA AACAGACGAG TTTGTAATTC
ATAGCCCCAC ATTAACTTCC AGCAAATGGT GGCCTGGTGG ACTGGGTAAA GTGTCAACGC ACGCAGTAGT TTATGCCAGG
CTAATTACTG ATGGTCAAGA TCATGGAGTG CATGGTTTCA TTGTCCAGCT GCGGAGCTTA GATGACCACT TACCTCTTCC
CGGCATAACT GTTGGTGATA TTGGAATGAA ATTTGGAAAT GGAGCATATA ACTCTATGGA TAATGGGGTT TTAAGGTTTG
ACCATGTACG GATTCCAAGA AATCAAATGT TAATGAGGGT TTCACAGGTA ACTAGAGAGG GAAAATATGC ACAATCTAGT
GTCCCACGAC AATTAGTTTA TGGTACTATG GTGTATGTAA GACAAACAAT TGTACGTGAT GCATCATCAG CTTTGGCACG
AGCAGTTTGC ATTGCTACAA GATACAGTGC TGTTCGAAGG CAGTTTGGGT CGAATAAAGG AAGTCTTGAG ACACAGGTGC
TTGATTATAA AACGCAGCAA GCTAGGCTCT TCCCTTTGTT AGCTTCAGCC TATGCTTTCA GATTTGTTGG TGAATGGTTG
AAATGGCTTT ATATGGATGT GATGAAACGA TTGCAAGCCA ATGATTTTTC AACATTACCT GAGGCTCATG CATGCACAGC
AGGGTTGAAG TCCTTGACTA CTTCAGTAAC TGCAGATGGA ATTGAAGAAT GCCGCAAACT ATGTGGTGGC CATGGCTACC
TTTGTAGTAG CGGTCTCCCT GAGTTATTTG CAGTCTATAT TCCTACCTGC ACATATGAAG GAGACAACAT TGTGCTGCTA
TTACAGGTGG CAAGGCATCT CATCAAGACT ATTTCTAAGT TGGGCTCCGG AAAAAAGCCT GTTGGTACAA CATCTTATAT
TGGACGAGTG GAGCAGCTGA TGCTATATCA TTCTGATGTT CAGAAAGCGG AGGATTGGTT GAAGCCTAAT GAAGTGCTGG
GAGCATTTGA AGCCAGGGCT GCTAAGAAGT TGGTTGCTTG TGCTCAAAAT CTTAGCAAGT TTACCAATCC TGAAGAAGGT
TTCCAAGAAC TATCTGCCGA TCTAGTTGAG ACAGCTGTTG CTCATTGTCA GTTAATTGTT GTTTCCAAAT TTATTGAGAA
GTTGCAGCAA GATATAACTG GAAAGGGAGT GAAACATCAA ATACAACTTC TTTGTAGCAT TTATGCTTTG TCTCTTCTTC
ATAAGCATTT GGGTGATTTT CTTTCAACTG GCTGCATCAC TCCCAAACAG GGTTCCCTTG CAAATGATCT GCTGAGGTCC
TTGTATTCAG AGGTTCGTCC GAATGCAATT GGACTTGTTG ATGCGTTTAA CTACACTGAT CACTACCTTG GTTCGGTTCT
TGGGCGCTAT GATGGAGATG TGTACCCAAA GCTGTACGAG GAGGCATGGA AGGATCCATT GAATGATTCA GTTGTGCCGG
ACGGTTTTCA AGAATATATT CGACCAATGC TAAAGCAACA ACTTCGAAAT GCTAGACTAT GAAACCTTTC ATAACTGTAC
CCTTACCGGA TAAAGTACTG TATTTTAAAC TTAATTTAAA GACAATAATA AAGTTTATGG AAGGAAAAAT AAATATACAC
CAATCAAATT GTCAA

>Vigan.01G375000.01
ATGGAAGGCG TCGTTGATCA CTTGGCTTTC GAGCGGAACA AGACGCAATT CGATGTCGAA GAAATGAAGA TCGTTTGGGC
TGGTTCTCGC CACGCTCTTG AAGTCTCCGA TAAAATGGCT CGTCTCGTTG CCAGCGATCC GGCGTTCAGA AAGGATGATA
GACCCATGCT TGGTAGGAAG GAGTTATTTA AGAACACTTT GAAAAAAGCA GTTTATGCGT GGAAAAGGAT TATCGAGCTC
CGTCTTACTG AAGAGGAAGC TGCTATGCTC AGAACTTTTG TGGACCAACC TGCTTTTACG GATCTACATT GGGGAATGTT
TATTCCTGCT ATCAAAGGAC AAGGAACCGA GGAACAGCAG CAAAAGTGGT TGCCTTTGGC TCAAAGGATG CAAATAATTG
GATGCTATGC CCAAACTGAA CTGGGCCATG GATCTAATGT TCAAGGGCTA GAAACAACTG CAACCTTTGA TCCCAAAACA
GACGAGTTTG TAATTCATAG CCCCACATTA ACTTCCAGCA AATGGTGGCC TGGTGGACTG GGTAAAGTGT CAACGCACGC
AGTAGTTTAT GCCAGGCTAA TTACTGATGG TCAAGATCAT GGAGTGCATG GTTTCATTGT CCAGCTGCGG AGCTTAGATG
ACCACTTACC TCTTCCCGGC ATAACTGTTG GTGATATTGG AATGAAATTT GGAAATGGAG CATATAACTC TATGGATAAT
GGGGTTTTAA GGTTTGACCA TGTACGGATT CCAAGAAATC AAATGTTAAT GAGGGTTTCA CAGGTAACTA GAGAGGGAAA
ATATGCACAA TCTAGTGTCC CACGACAATT AGTTTATGGT ACTATGGTGT ATGTAAGACA AACAATTGTA CGTGATGCAT
CATCAGCTTT GGCACGAGCA GTTTGCATTG CTACAAGATA CAGTGCTGTT CGAAGGCAGT TTGGGTCGAA TAAAGGAAGT
CTTGAGACAC AGGTGCTTGA TTATAAAACG CAGCAAGCTA GGCTCTTCCC TTTGTTAGCT TCAGCCTATG CTTTCAGATT
TGTTGGTGAA TGGTTGAAAT GGCTTTATAT GGATGTGATG AAACGATTGC AAGCCAATGA TTTTTCAACA TTACCTGAGG
CTCATGCATG CACAGCAGGG TTGAAGTCCT TGACTACTTC AGTAACTGCA GATGGAATTG AAGAATGCCG CAAACTATGT
GGTGGCCATG GCTACCTTTG TAGTAGCGGT CTCCCTGAGT TATTTGCAGT CTATATTCCT ACCTGCACAT ATGAAGGAGA
CAACATTGTG CTGCTATTAC AGGTGGCAAG GCATCTCATC AAGACTATTT CTAAGTTGGG CTCCGGAAAA AAGCCTGTTG
GTACAACATC TTATATTGGA CGAGTGGAGC AGCTGATGCT ATATCATTCT GATGTTCAGA AAGCGGAGGA TTGGTTGAAG
CCTAATGAAG TGCTGGGAGC ATTTGAAGCC AGGGCTGCTA AGAAGTTGGT TGCTTGTGCT CAAAATCTTA GCAAGTTTAC
CAATCCTGAA GAAGGTTTCC AAGAACTATC TGCCGATCTA GTTGAGACAG CTGTTGCTCA TTGTCAGTTA ATTGTTGTTT
CCAAATTTAT TGAGAAGTTG CAGCAAGATA TAACTGGAAA GGGAGTGAAA CATCAAATAC AACTTCTTTG TAGCATTTAT
GCTTTGTCTC TTCTTCATAA GCATTTGGGT GATTTTCTTT CAACTGGCTG CATCACTCCC AAACAGGGTT CCCTTGCAAA
TGATCTGCTG AGGTCCTTGT ATTCAGAGGT TCGTCCGAAT GCAATTGGAC TTGTTGATGC GTTTAACTAC ACTGATCACT
ACCTTGGTTC GGTTCTTGGG CGCTATGATG GAGATGTGTA CCCAAAGCTG TACGAGGAGG CATGGAAGGA TCCATTGAAT
GATTCAGTTG TGCCGGACGG TTTTCAAGAA TATATTCGAC CAATGCTAAA GCAACAACTT CGAAATGCTA GACTATGA

>Vigan.01G375000.01
MEGVVDHLAF ERNKTQFDVE EMKIVWAGSR HALEVSDKMA RLVASDPAFR KDDRPMLGRK ELFKNTLKKA VYAWKRIIEL
RLTEEEAAML RTFVDQPAFT DLHWGMFIPA IKGQGTEEQQ QKWLPLAQRM QIIGCYAQTE LGHGSNVQGL ETTATFDPKT
DEFVIHSPTL TSSKWWPGGL GKVSTHAVVY ARLITDGQDH GVHGFIVQLR SLDDHLPLPG ITVGDIGMKF GNGAYNSMDN
GVLRFDHVRI PRNQMLMRVS QVTREGKYAQ SSVPRQLVYG TMVYVRQTIV RDASSALARA VCIATRYSAV RRQFGSNKGS
LETQVLDYKT QQARLFPLLA SAYAFRFVGE WLKWLYMDVM KRLQANDFST LPEAHACTAG LKSLTTSVTA DGIEECRKLC
GGHGYLCSSG LPELFAVYIP TCTYEGDNIV LLLQVARHLI KTISKLGSGK KPVGTTSYIG RVEQLMLYHS DVQKAEDWLK
PNEVLGAFEA RAAKKLVACA QNLSKFTNPE EGFQELSADL VETAVAHCQL IVVSKFIEKL QQDITGKGVK HQIQLLCSIY
ALSLLHKHLG DFLSTGCITP KQGSLANDLL RSLYSEVRPN AIGLVDAFNY TDHYLGSVLG RYDGDVYPKL YEEAWKDPLN
DSVVPDGFQE YIRPMLKQQL RNARL*