GBrowse Details

Vigan.01G376400.01

Basic Information:
Name: Vigan.01G376400.01
Multiple alignment
Variant Information
Position: Chr01:51530384..51533652 (- strand)
Length: 3269
Functional Information:
Description: Similar to Uncharacterized protein. [I1MV22, Glycine max]
GO: Biological Process: 'de novo' IMP biosynthetic process (GO:0006189)
Biological Process: metabolic process (GO:0008152)
Biological Process: biosynthetic process (GO:0009058)
Molecular Function: formyltetrahydrofolate deformylase activity (GO:0008864)
Molecular Function: amino acid binding (GO:0016597)
Molecular Function: hydroxymethyl-, formyl- and related transferase activity (GO:0016742)
InterPro: Formyl transferase, N-terminal (IPR002376)
ACT domain (IPR002912)
Formyltetrahydrofolate deformylase (IPR004810)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.21,2.26,3.85,20.04,7.24,2.29,6.05,6.82
Arabidopsis thaliana homolog: AT5G47435.2
Automatic updates:
Name: NM_001253252 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max formyltetrahydrofolate deformylase-like (LOC100780134), mRNA; nuclear gene for mitochondrial product.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr01:51530384..51530585 (- strand)
Length: 202
Type: three_prime_UTR
Position: Chr01:51530586..51530732 (- strand)
Length: 147
Type: CDS
Position: Chr01:51531492..51531578 (- strand)
Length: 87
Type: CDS
Position: Chr01:51531697..51531795 (- strand)
Length: 99
Type: CDS
Position: Chr01:51532037..51532196 (- strand)
Length: 160
Type: CDS
Position: Chr01:51532290..51532363 (- strand)
Length: 74
Type: CDS
Position: Chr01:51532468..51532618 (- strand)
Length: 151
Type: CDS
Position: Chr01:51533142..51533254 (- strand)
Length: 113
Type: CDS
Position: Chr01:51533356..51533478 (- strand)
Length: 123
Type: CDS
Position: Chr01:51533479..51533652 (- strand)
Length: 174
Type: five_prime_UTR


>Vigan.01G376400.01
CCAACTTGCA GACCGCGTAA AAAAAGACAA AACGGCATGT CGTTTATAAG AACATAGGAG ACGACAAGCG AAAGGTTAGT
GGTGGATTGA GAGAGTGCGG TGTTGGTTGA AGATGTGGAA AGTTGGTGGT TGATGCTTGA TCCTCGACTT AGCGATTCAG
ACAGAGAGTA GCCAATGGCC CGAAGATTCC CTCGCGTTAT GGGATTAGCC AAAATGTGCA GGAACCGGAA CATCTCCTTC
AAATCTTTGG ATCCCCCTTC CTCCCTCACC CATGGAATCC ACATCTTTCA TTGCCCTGAC GCGGTGGGAA TTGTTGCCAA
GCTATCGGAA TGTATTGCTT CTAGAGGGGG AAACATTCTC ACTGCTGATG TTTTTGTTCC AGAAAATAAA CAAGTCTTCT
ACTCGAGAAG TGATTTTGTT TTTGATCCTG TTAAGTGGCC ACGTGTGCAA ATGGAGGAGG ACTTCCTAAA GCTTTCACAA
ACATTCAGTG CAATAAGATC TGTTGTAAGA GTGCCAGCCC TGGATCCTAA ATATAAGATA GCAGTTCTGG CATCAAAGCA
GGACCACTGC CTTGTTGACT TATTACATGG ATGGCAGGAC GGAAGATTTC CAGTAGATAT TACTTGTGTA ATAAGTAACC
ATTATAGAGG TTCAAACACC CATGTGATTC GTTTTCTTGA AAGACATGAT ATTCCGTATC ATTATTTATG CACAACGAAT
GAAAATAAAA GAGAAGGGGA GATGTTGCAG CTGGTTCAGA ATACTGATTT TTTAGTACTT GCGAGGTATA TGCAGATATT
GTCTGGAAAC TTTTTAAGGA GCTACGGGAA CGATATAATT AACATTCACC ATGGCCTGTT GCCATCGTTC AAAGGTGGCA
GTCCATCTAA ACAGGCCTTT GAGGCAGGTG TTAAATTAAT TGGTGCAACA AGTCACTTTG TAACTGAAGA ACTTGATGCC
GGACCTATAA TTGAACAAAT GGTTGAGAGG GTTTCCCATA GAGATAACTT GCAGAGCTTT GTGCAGAAAT CAGAAAACCT
AGAGAAGCAA TGCCTTTCCA AGGCTATCAG ATCTTATTGT GAACTTCGAG TGTTACCTTA TGAAGAAAAT AAGACTGTTG
TATTTTAAAG AAAACAGCAA ATAACCAAAA TATACATGCG CACCAAAATG GGGTGCTTTT GTATTTTTAT TCAATCATTT
TGTTGGAAAA TTCAATCAAT TTCTGACTTT AGTTGTAAAA TATGAGCTTA AGAAGAAGAT TGAACTTGAT TCTTTGGGTC
CTTGTAGCTT TGCTAATTCC GTGAAATAAA TTCTGCAACT TGCTTGGCTT 

>Vigan.01G376400.01
ATGGCCCGAA GATTCCCTCG CGTTATGGGA TTAGCCAAAA TGTGCAGGAA CCGGAACATC TCCTTCAAAT CTTTGGATCC
CCCTTCCTCC CTCACCCATG GAATCCACAT CTTTCATTGC CCTGACGCGG TGGGAATTGT TGCCAAGCTA TCGGAATGTA
TTGCTTCTAG AGGGGGAAAC ATTCTCACTG CTGATGTTTT TGTTCCAGAA AATAAACAAG TCTTCTACTC GAGAAGTGAT
TTTGTTTTTG ATCCTGTTAA GTGGCCACGT GTGCAAATGG AGGAGGACTT CCTAAAGCTT TCACAAACAT TCAGTGCAAT
AAGATCTGTT GTAAGAGTGC CAGCCCTGGA TCCTAAATAT AAGATAGCAG TTCTGGCATC AAAGCAGGAC CACTGCCTTG
TTGACTTATT ACATGGATGG CAGGACGGAA GATTTCCAGT AGATATTACT TGTGTAATAA GTAACCATTA TAGAGGTTCA
AACACCCATG TGATTCGTTT TCTTGAAAGA CATGATATTC CGTATCATTA TTTATGCACA ACGAATGAAA ATAAAAGAGA
AGGGGAGATG TTGCAGCTGG TTCAGAATAC TGATTTTTTA GTACTTGCGA GGTATATGCA GATATTGTCT GGAAACTTTT
TAAGGAGCTA CGGGAACGAT ATAATTAACA TTCACCATGG CCTGTTGCCA TCGTTCAAAG GTGGCAGTCC ATCTAAACAG
GCCTTTGAGG CAGGTGTTAA ATTAATTGGT GCAACAAGTC ACTTTGTAAC TGAAGAACTT GATGCCGGAC CTATAATTGA
ACAAATGGTT GAGAGGGTTT CCCATAGAGA TAACTTGCAG AGCTTTGTGC AGAAATCAGA AAACCTAGAG AAGCAATGCC
TTTCCAAGGC TATCAGATCT TATTGTGAAC TTCGAGTGTT ACCTTATGAA GAAAATAAGA CTGTTGTATT TTAA

>Vigan.01G376400.01
MARRFPRVMG LAKMCRNRNI SFKSLDPPSS LTHGIHIFHC PDAVGIVAKL SECIASRGGN ILTADVFVPE NKQVFYSRSD
FVFDPVKWPR VQMEEDFLKL SQTFSAIRSV VRVPALDPKY KIAVLASKQD HCLVDLLHGW QDGRFPVDIT CVISNHYRGS
NTHVIRFLER HDIPYHYLCT TNENKREGEM LQLVQNTDFL VLARYMQILS GNFLRSYGND IINIHHGLLP SFKGGSPSKQ
AFEAGVKLIG ATSHFVTEEL DAGPIIEQMV ERVSHRDNLQ SFVQKSENLE KQCLSKAIRS YCELRVLPYE ENKTVVF*