GBrowse Details

Vigan.01G377500.01

Basic Information:
Name: Vigan.01G377500.01
Multiple alignment
Variant Information
Position: Chr01:51632256..51637289 (+ strand)
Length: 5034
Functional Information:
Description: Similar to Peroxisomal biogenesis factor. [G7JIW5, Medicago truncatula]
GO: Cellular Component: peroxisome (GO:0005777)
InterPro: Pex19 protein (IPR006708)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:184.29,79.26,15.38,28.13,23.49,12.82,17.86,11.85
Arabidopsis thaliana homolog: AT3G03490.1
Automatic updates:
Name: NM_001248481 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative peroxisome biogenesis protein 19 (LOC100527390), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249227 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500051 (LOC100500051), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:51632256..51632332 (+ strand)
Length: 77
Type: five_prime_UTR
Position: Chr01:51632333..51632372 (+ strand)
Length: 40
Type: CDS
Position: Chr01:51632445..51632493 (+ strand)
Length: 49
Type: CDS
Position: Chr01:51632595..51632871 (+ strand)
Length: 277
Type: CDS
Position: Chr01:51635274..51635590 (+ strand)
Length: 317
Type: CDS
Position: Chr01:51636231..51636276 (+ strand)
Length: 46
Type: CDS
Position: Chr01:51636277..51637289 (+ strand)
Length: 1013
Type: three_prime_UTR


>Vigan.01G377500.01
GGATGAGAAA GAAGACTGCA TAGTTAGTTT ATTCATTCCA TTAGCCATAG CAGCAGTGTT GTGTGGCGGT GACAACCATG
GCCGACTCCT CTCAAGACCT CGACCAACTC CTCGATAGTG CTTTGGATGA TTTTCAGTCC TTCAACCTTA ATCCTTCTCT
TCCAAGTGGG GGAGCAATTG CGAGCAAAAA CGAGAGTCCT TCGTTGCCGT CGGGGGTTCA GGGATTGGGC ATGGGTTTAC
CTGATTTGAG AACGAAGAAA AAGGGGAAGC AGAAGGCTTC GAAGGACAGC CACGTGGCGG AGGCGCTGAA CAAGCTGAGG
GAGCAGACCA GAGAGGCTGT GAAGGGCCTG GAGTCTATGA ACCCTCCTGC TGCTGATGAT TTGGGGAAGG ATGCATTGAT
GGAAGATTGG GTCAAACAGT TTGAGCAGCT TGCTGGCTCT CAGGATATGG AATCTATTGT GGAGACCATG ATGCAGCAAC
TTCTGTCCAA AGAGATTCTT CACGAACCAA TGAAAGAAAT AGCAGAAAAA TATCCTAAGT GGCTGGAAGA CCACAAATCT
AGCTTAAGCA AAGAAGAATA TGACCGTTAC GCACACCAAT ATGAATTGAT ACGAAACCTG AATGAAGTTT ACGAAAATGA
TGCCGTAAAC TTTAACAAGA TTGTCGAGCT CATGCAGAAA ATGCAAGAAT GTGGACAACC ACCAAATGAA ATCGTCCAGG
AGCTTGCTCC GGATTTCGAT TTAGCGAGTC TTGGCCAGAT ATCTCCAGAG ATGCTTGAAG GTCAGCAAAA TTGTTGCATA
ATGTGAAGCT ATTTCTTGCC ATTTATCAAG TCTCTTTGAC GGTTTACATT ACAGATTTTT AGGAATATTT GATTTTCGCG
TGTCAGAATA AGATAGTTTT ATGTGCTACA ATGTTTTACC CTACTCACGA CAAGGTTACG AGGAAACCAC AATTAAAGTC
TCCTTTGAGG GTTCTATATA TCAATATTTT CTGCTGGAAA TTATATTACG AGTTGTTAGT TGCAAACAAA ATTTGCTTTC
TGATTTGTTG AGATTCATTT GCCTTCATAA TGAGTAATGA CTAGCTATTT GCAAGGCTGA AAAACACCAG TAGATTTATA
GGTAAGATAC ACGGATTATT CTTTCTGTAA AGGACTTACT AGTAAATGAT GCCATAACTA GCCATTCTGT CTATATATTA
TCAAATATTC AAACACCAAA ATCCTTTGTA GGAGTTTTGT GTAAAGTCCC CCTCCCCCTA ACCTTGCAGT AAAACCAGCT
GATAAACACG GAAATGAAAT TTTATTCATA ATAAAAGAAT CAAGATATGG CATTTGAAAA GTGATAGAAG AGTATACAGT
ATACAAATCA GGCCCTCAAC TGTATTTGTC AGTTGCGAAA CAAAGGCCCC TCTTTTAAAG ATTGAATGGA TGAATTTCCT
ATGGTTAAAC ACAAAATGAA AAAATGACAG CAATGATATT GGGTGGACTA AAGCTGTGCA ATATGTTGTT TTGGGGGCTC
TTTGCATTTA GCTTGTTCAG CTGTTAGCTA AGCATCAGAG GGTGCCATCC AGTGTTTCCC ATTAACAAAA CTCTTGACCA
GGAATGGGTG GGCAGATTCA AAATCTAGCT CTTTGGCTAA TGGGACTCCA CTTATAGCCG CAGCACCTGG TCCCCAGCAT
TTGTACACTC CAAAGAACAC AGTCCTAAAC ACCCCAAATC AAGATAAATA TTTTCAATTT AAATTGGAAG AAACATACCA
TAGTAAGATG ATTATATAGT ATGAAATGAT AGTGGATAAC CCAAAGAAAA TTGTATGAT

>Vigan.01G377500.01
ATGGCCGACT CCTCTCAAGA CCTCGACCAA CTCCTCGATA GTGCTTTGGA TGATTTTCAG TCCTTCAACC TTAATCCTTC
TCTTCCAAGT GGGGGAGCAA TTGCGAGCAA AAACGAGAGT CCTTCGTTGC CGTCGGGGGT TCAGGGATTG GGCATGGGTT
TACCTGATTT GAGAACGAAG AAAAAGGGGA AGCAGAAGGC TTCGAAGGAC AGCCACGTGG CGGAGGCGCT GAACAAGCTG
AGGGAGCAGA CCAGAGAGGC TGTGAAGGGC CTGGAGTCTA TGAACCCTCC TGCTGCTGAT GATTTGGGGA AGGATGCATT
GATGGAAGAT TGGGTCAAAC AGTTTGAGCA GCTTGCTGGC TCTCAGGATA TGGAATCTAT TGTGGAGACC ATGATGCAGC
AACTTCTGTC CAAAGAGATT CTTCACGAAC CAATGAAAGA AATAGCAGAA AAATATCCTA AGTGGCTGGA AGACCACAAA
TCTAGCTTAA GCAAAGAAGA ATATGACCGT TACGCACACC AATATGAATT GATACGAAAC CTGAATGAAG TTTACGAAAA
TGATGCCGTA AACTTTAACA AGATTGTCGA GCTCATGCAG AAAATGCAAG AATGTGGACA ACCACCAAAT GAAATCGTCC
AGGAGCTTGC TCCGGATTTC GATTTAGCGA GTCTTGGCCA GATATCTCCA GAGATGCTTG AAGGTCAGCA AAATTGTTGC
ATAATGTGA

>Vigan.01G377500.01
MADSSQDLDQ LLDSALDDFQ SFNLNPSLPS GGAIASKNES PSLPSGVQGL GMGLPDLRTK KKGKQKASKD SHVAEALNKL
REQTREAVKG LESMNPPAAD DLGKDALMED WVKQFEQLAG SQDMESIVET MMQQLLSKEI LHEPMKEIAE KYPKWLEDHK
SSLSKEEYDR YAHQYELIRN LNEVYENDAV NFNKIVELMQ KMQECGQPPN EIVQELAPDF DLASLGQISP EMLEGQQNCC
IM*