GBrowse Details

Vigan.01G380500.01

Basic Information:
Name: Vigan.01G380500.01
Multiple alignment
Variant Information
Position: Chr01:51917678..51922334 (+ strand)
Length: 4657
Functional Information:
Description: Similar to Uncharacterized protein. [I1K0L7, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Transaldolase (IPR001585)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.62,28.03,36.66,11.45,26.66,40.52,28.13,32.28
Arabidopsis thaliana homolog: AT1G12230.2
Automatic updates:
Name: NM_001255430 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transaldolase-like (LOC100800377), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:51917678..51917854 (+ strand)
Length: 177
Type: five_prime_UTR
Position: Chr01:51917855..51918038 (+ strand)
Length: 184
Type: CDS
Position: Chr01:51918204..51918282 (+ strand)
Length: 79
Type: CDS
Position: Chr01:51918375..51918450 (+ strand)
Length: 76
Type: CDS
Position: Chr01:51918547..51918630 (+ strand)
Length: 84
Type: CDS
Position: Chr01:51918740..51918844 (+ strand)
Length: 105
Type: CDS
Position: Chr01:51919299..51919379 (+ strand)
Length: 81
Type: CDS
Position: Chr01:51919471..51919535 (+ strand)
Length: 65
Type: CDS
Position: Chr01:51920650..51920719 (+ strand)
Length: 70
Type: CDS
Position: Chr01:51920804..51920881 (+ strand)
Length: 78
Type: CDS
Position: Chr01:51921181..51921278 (+ strand)
Length: 98
Type: CDS
Position: Chr01:51921381..51921516 (+ strand)
Length: 136
Type: CDS
Position: Chr01:51922025..51922171 (+ strand)
Length: 147
Type: CDS
Position: Chr01:51922172..51922334 (+ strand)
Length: 163
Type: three_prime_UTR


>Vigan.01G380500.01
TATTGCTTAA AAACTGTTAC AAAGATAGGT AGCAGAGAAA AAAAAAAATA TAAATCTGAC ACGATTGGTG CCAAAATTAG
AGAGGTGAAT GTGTTTTGGA TGTGGATCTG GCCTATTACT TTCAGTTATT AATTCAGAAG TGGTAACGGA GCTTACCGTC
TTAATCTCAA TCTCAAAATG TCACTCACTT TGCAAACTCC GTCCTCGACG ACGCTCTCTT CTGCATCTTC CATTCACTCG
ACAACAAGAA GATCGACTTC TTACTTCTCG ATTCGTTCCA CGCTTTCCCC AAAAACTATC CATTGCAATT CCCGCAGGTC
CTACCCTCAA ACTCTCGCTT CTGCTTCCTC TATCAATATC GCTTCCACCA CTGAACTCGA TGCTGTGTCC GCCTTCAGCG
AGATCGTCCC CGACACCGTC GTTTTCGATG ATTTCGAGAA ATTTCCTCCA ACTGCTGCTA CTGTCAGTTC ATCGCTTCTC
TTGGGAATAT GTGGCCTTCC AGATACCATT TTTAGGAATG CTGTGGAAAT GGCTTTGGCT GATTCTGAGT GTTATGGAAT
TGAAAATCCT AATGCACGAG TGTCTTGTTT TGTCAACAAG GCTTTCGCGA ATGTGGGTAG TGACTTGGCA AAGCTTGTCC
CTGGCCGTGT TTCCACAGAG GTGGATGCGC GGCTTGCTTA TGACACGCAC GCCATTATCA GGAAGGTGCA TGACTTGTTA
AAGTTGTACA ATGATAGCAA TGTACCTCCT GAACGTCTGT TGTTTAAAAT TCCTTCAACT TGGCAAGGAA TAGAGGCTGC
AAGGTTGCTG GAATCTGAAG GCATACAAAC ACATTTGACC TTTGTCTATA GTTTTGCTCA AGTCGCTGCT GCAGCTCAAG
CTGGTGCATC TGTTATTCAA ATTTTTGTTG GTCGTATAAG GGATTGGGCA CGTAATCATT CTGGTGACGC AGAGATAGAA
TCTGCCCAGC TAAGAGGAGA GGATCCAGGG TTGGCATTAG TGACAAAAGC TTACAATTAT ATTCACAAAT ATCGACATAA
GTCAAAGTTG ATGGCAGCCG CTGTTCGCAA CAAACAGGAT CTATTTAGTC TTCTGGGGGT TGACTATATC ATCGCTCCAT
TAAAGGTATT GCAGTCTCTC AAAGAGTCTG TTGCTTCTCC TGATGAGAAG TACTCTTTTG TTAGGAGGTT ATCCCCTCAG
TCTGCTGCAA CGTACCAATT TCGTGAGGAA GAGCTTGTTC AATGGGACCA TGATAGCATG GTAAATGCCA TGGGGCCTGC
AGCTGTGCAG CTTTTGGCTG CTGGACTGGA TGGCCATGCT GATCAAGCAA AGCGGGTGGA AGATCTATTT GAGAAAATTT
GGCCACCACC AAATGTATGA TTTGACGTCT GTCTTTTTGT CGAAAGAGTG TTTTTCCTGA TGGAATAAAC GTAGTAGCGA
ACAGATGAAG GGGATATTCC GTTTTTCTCT TTCCCTCTGA CCTTTGAACC CTTAAACAAT TTCCTTAATA TATAAAGCAC
GCGATTCCTA AATGCACTTC TGG

>Vigan.01G380500.01
ATGTCACTCA CTTTGCAAAC TCCGTCCTCG ACGACGCTCT CTTCTGCATC TTCCATTCAC TCGACAACAA GAAGATCGAC
TTCTTACTTC TCGATTCGTT CCACGCTTTC CCCAAAAACT ATCCATTGCA ATTCCCGCAG GTCCTACCCT CAAACTCTCG
CTTCTGCTTC CTCTATCAAT ATCGCTTCCA CCACTGAACT CGATGCTGTG TCCGCCTTCA GCGAGATCGT CCCCGACACC
GTCGTTTTCG ATGATTTCGA GAAATTTCCT CCAACTGCTG CTACTGTCAG TTCATCGCTT CTCTTGGGAA TATGTGGCCT
TCCAGATACC ATTTTTAGGA ATGCTGTGGA AATGGCTTTG GCTGATTCTG AGTGTTATGG AATTGAAAAT CCTAATGCAC
GAGTGTCTTG TTTTGTCAAC AAGGCTTTCG CGAATGTGGG TAGTGACTTG GCAAAGCTTG TCCCTGGCCG TGTTTCCACA
GAGGTGGATG CGCGGCTTGC TTATGACACG CACGCCATTA TCAGGAAGGT GCATGACTTG TTAAAGTTGT ACAATGATAG
CAATGTACCT CCTGAACGTC TGTTGTTTAA AATTCCTTCA ACTTGGCAAG GAATAGAGGC TGCAAGGTTG CTGGAATCTG
AAGGCATACA AACACATTTG ACCTTTGTCT ATAGTTTTGC TCAAGTCGCT GCTGCAGCTC AAGCTGGTGC ATCTGTTATT
CAAATTTTTG TTGGTCGTAT AAGGGATTGG GCACGTAATC ATTCTGGTGA CGCAGAGATA GAATCTGCCC AGCTAAGAGG
AGAGGATCCA GGGTTGGCAT TAGTGACAAA AGCTTACAAT TATATTCACA AATATCGACA TAAGTCAAAG TTGATGGCAG
CCGCTGTTCG CAACAAACAG GATCTATTTA GTCTTCTGGG GGTTGACTAT ATCATCGCTC CATTAAAGGT ATTGCAGTCT
CTCAAAGAGT CTGTTGCTTC TCCTGATGAG AAGTACTCTT TTGTTAGGAG GTTATCCCCT CAGTCTGCTG CAACGTACCA
ATTTCGTGAG GAAGAGCTTG TTCAATGGGA CCATGATAGC ATGGTAAATG CCATGGGGCC TGCAGCTGTG CAGCTTTTGG
CTGCTGGACT GGATGGCCAT GCTGATCAAG CAAAGCGGGT GGAAGATCTA TTTGAGAAAA TTTGGCCACC ACCAAATGTA
TGA

>Vigan.01G380500.01
MSLTLQTPSS TTLSSASSIH STTRRSTSYF SIRSTLSPKT IHCNSRRSYP QTLASASSIN IASTTELDAV SAFSEIVPDT
VVFDDFEKFP PTAATVSSSL LLGICGLPDT IFRNAVEMAL ADSECYGIEN PNARVSCFVN KAFANVGSDL AKLVPGRVST
EVDARLAYDT HAIIRKVHDL LKLYNDSNVP PERLLFKIPS TWQGIEAARL LESEGIQTHL TFVYSFAQVA AAAQAGASVI
QIFVGRIRDW ARNHSGDAEI ESAQLRGEDP GLALVTKAYN YIHKYRHKSK LMAAAVRNKQ DLFSLLGVDY IIAPLKVLQS
LKESVASPDE KYSFVRRLSP QSAATYQFRE EELVQWDHDS MVNAMGPAAV QLLAAGLDGH ADQAKRVEDL FEKIWPPPNV
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