VIGGS:GBrowse

Vigan.01G381400.01

Basic Information:

Name:	Vigan.01G381400.01 Multiple alignment Variant Information
Position:	Chr01:52099642..52107507 (+ strand)
Length:	7866

Functional Information:

Description:	Similar to Uncharacterized protein. [Q9BBU5, Glycine max]
GO:	Biological Process: superoxide metabolic process (GO:0006801)
	Biological Process: metal ion transport (GO:0030001)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: metal ion binding (GO:0046872)
InterPro:	Superoxide dismutase, copper/zinc binding domain (IPR001424)
	Heavy metal-associated domain, HMA (IPR006121)
	Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone (IPR024134)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:100.63,40.09,22.58,22.83,8.27,17.18,12.68,10.44
Arabidopsis thaliana homolog:	AT1G12520.1

Automatic updates:

Name:	AF329816 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Cu/Zn-superoxide dismutase copper chaperone precursor (CCS) mRNA, complete cds; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001248512 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max Cu/Zn-superoxide dismutase copper chaperone (CCS), mRNA.
PubMed ID:	21264427 NCBI(pubmed)
PubMed ID:	14624337 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr01:52099642..52099764 (+ strand)
Length:	123
Type:	five_prime_UTR

Position:	Chr01:52099765..52099980 (+ strand)
Length:	216
Type:	CDS

Position:	Chr01:52100063..52100092 (+ strand)
Length:	30
Type:	CDS

Position:	Chr01:52100181..52100253 (+ strand)
Length:	73
Type:	CDS

Position:	Chr01:52100814..52100948 (+ strand)
Length:	135
Type:	CDS

Position:	Chr01:52104762..52104985 (+ strand)
Length:	224
Type:	CDS

Position:	Chr01:52107019..52107282 (+ strand)
Length:	264
Type:	CDS

Position:	Chr01:52107283..52107507 (+ strand)
Length:	225
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.01G381400.01
GAAGTGTGGA TCCATCTGGA ATGAAGTGGC ATGAAACAAA CATAGAGGTA GCTAGCTACC TACCAGCCTG AGTGCGTTTT
GTTCTGTGTA ATAAATAAAT AAAGAAGGAA TAGTTGGAGT AAAATGGCAT TTCTGAGGTC AGTAGCAACA ACAGCAACTG
CTGTAGCAGC TATTCCTGCA GCCTTCGCCT TCTCTTCTGT TTCATCTTCT TCATCATCGT CATCTTCCTC TTTCTCTCGC
TCTTCCGAAT CTTCCAATTC CTCCAATAGA TTCGGCCTTC TCAAAACACT TGCTACCCCT CCCTCTGTTC TCCACATGGA
TCACAAACTC TCTTCTCAGC CTGATGATGC CGTCTTGCCC GAGTTACTGA CGGAGTACAT GGTGGATATG AAATGCGAAG
GTTGTGTTAA TGCTGTCAAA AATAAGTTGC ACGAGATTAA TGGAGTTAAG AACGTAGAGG TGGACTTGAG CAATCAGGTT
GTAAGGATTC TTGGTTCAAC GCCGGTTAAG ACCATGACTG AAGCCTTGGA GCAGACTGGT AGAAAAGCCC GGTTAATTGG
ACAAGGAATA CCGGAAGATT TCTTGATATC TGCTGCTGTT TCCGAATTCA AAGGTCCAGA TATTTTTGGT GTTGTTCGCC
TGGCTCAAGT AAACATGGAA CTAGCTAGGA TTGAAGCCAA CTTTAGTGGG CTGTCACCAG GAAAGCACGG TTGGTCTATT
AATGAGTTCG GAGATCTGAC TAGAGGTGCA GCAAGCACTG GTAAAATATT CAATCCGATA AATGAGGAAA ACACCAAAGA
GCCACTTGGC GACCTGGGAA CACTAGAAGC CAATGAAAAT GGTGATGCCT TCTACACTGG GGTCAAAGAA AAACTGAGGG
TGGCAGATCT TATTGGAAGA TCTATGGTGG TATATGCAAC TGAAGATAAA ACAAAACATG GTATAACTGC TGCAGTAATT
GCCAGAAGTG CAGGAGTGGG CGAGAACTAT AAAAAGCTCT GTACGTGTGA TGGCACCACT ATATGGGATG CCACGGATAA
GGATTTTGTA TCCAGCAAGG TCTGACAGAG TAATTCACTG AAAGCAAAGC ATTGCTATTT AGTTGTCTTG TCCCCATCAG
CAATATTATA TTTTGAAGAT CGCATACCTC TTTTGGAAAG TAATTCATCT GTCTTTGATT TATACTGAGT TTCTTCTCCA
GAATTATGAA CTTATTTTTT TTGGTTAAGA TGGATGTTAA TTTGACATAA ATTATCGAGT TATTTTAGAC ATTTAATAAT
TGTTGGACAA

[show][hide][copy]CDS

>Vigan.01G381400.01
ATGGCATTTC TGAGGTCAGT AGCAACAACA GCAACTGCTG TAGCAGCTAT TCCTGCAGCC TTCGCCTTCT CTTCTGTTTC
ATCTTCTTCA TCATCGTCAT CTTCCTCTTT CTCTCGCTCT TCCGAATCTT CCAATTCCTC CAATAGATTC GGCCTTCTCA
AAACACTTGC TACCCCTCCC TCTGTTCTCC ACATGGATCA CAAACTCTCT TCTCAGCCTG ATGATGCCGT CTTGCCCGAG
TTACTGACGG AGTACATGGT GGATATGAAA TGCGAAGGTT GTGTTAATGC TGTCAAAAAT AAGTTGCACG AGATTAATGG
AGTTAAGAAC GTAGAGGTGG ACTTGAGCAA TCAGGTTGTA AGGATTCTTG GTTCAACGCC GGTTAAGACC ATGACTGAAG
CCTTGGAGCA GACTGGTAGA AAAGCCCGGT TAATTGGACA AGGAATACCG GAAGATTTCT TGATATCTGC TGCTGTTTCC
GAATTCAAAG GTCCAGATAT TTTTGGTGTT GTTCGCCTGG CTCAAGTAAA CATGGAACTA GCTAGGATTG AAGCCAACTT
TAGTGGGCTG TCACCAGGAA AGCACGGTTG GTCTATTAAT GAGTTCGGAG ATCTGACTAG AGGTGCAGCA AGCACTGGTA
AAATATTCAA TCCGATAAAT GAGGAAAACA CCAAAGAGCC ACTTGGCGAC CTGGGAACAC TAGAAGCCAA TGAAAATGGT
GATGCCTTCT ACACTGGGGT CAAAGAAAAA CTGAGGGTGG CAGATCTTAT TGGAAGATCT ATGGTGGTAT ATGCAACTGA
AGATAAAACA AAACATGGTA TAACTGCTGC AGTAATTGCC AGAAGTGCAG GAGTGGGCGA GAACTATAAA AAGCTCTGTA
CGTGTGATGG CACCACTATA TGGGATGCCA CGGATAAGGA TTTTGTATCC AGCAAGGTCT GA

[show][hide][copy]PROTEIN

>Vigan.01G381400.01
MAFLRSVATT ATAVAAIPAA FAFSSVSSSS SSSSSSFSRS SESSNSSNRF GLLKTLATPP SVLHMDHKLS SQPDDAVLPE
LLTEYMVDMK CEGCVNAVKN KLHEINGVKN VEVDLSNQVV RILGSTPVKT MTEALEQTGR KARLIGQGIP EDFLISAAVS
EFKGPDIFGV VRLAQVNMEL ARIEANFSGL SPGKHGWSIN EFGDLTRGAA STGKIFNPIN EENTKEPLGD LGTLEANENG
DAFYTGVKEK LRVADLIGRS MVVYATEDKT KHGITAAVIA RSAGVGENYK KLCTCDGTTI WDATDKDFVS SKV*