GBrowse Details

Vigan.01G386400.01

Basic Information:
Name: Vigan.01G386400.01
Multiple alignment
Variant Information
Position: Chr01:52585461..52587700 (- strand)
Length: 2240
Functional Information:
Description: Similar to Uncharacterized protein. [K7MLH0, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.60,1.59,1.39,0.83,3.42,0.95,13.57
Automatic updates:
Name: KT031198 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_75 MYB/HD-like transcription factor (Glyma11g03300.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001254158 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein ODORANT1-like (MYBJ1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:52585461..52586005 (- strand)
Length: 545
Type: three_prime_UTR
Position: Chr01:52586006..52586558 (- strand)
Length: 553
Type: CDS
Position: Chr01:52587323..52587585 (- strand)
Length: 263
Type: CDS
Position: Chr01:52587586..52587700 (- strand)
Length: 115
Type: five_prime_UTR


>Vigan.01G386400.01
GGGGAGTGGG GCTTTTGGGT CATTACTCAT TACAAGCTTG TGTTGGTAAG ACTTTTGCAT TAGTGTGGGA AATTGCATTG
ATTAGCTTGG TAGTGTTGTT GTTTGTGCAA GTGGTATGGG GAGGCAACCC TGCTGTGACA AACTTGGGGT GAAGAAAGGT
CCATGGACTG CAGAGGAAGA CAAGAAGCTC ATCAACTTCA TTCTCACCAA TGGCCAGTGT TGTTGGCGTG CTGTGCCAAA
GCTTGCTGGC CTTAGGCGTT GTGGCAAGAG TTGTCGCCTT CGTTGGACTA ATTATCTTCG CCCAGACTTG AAGAGAGGAC
TCCTCACACA AGCAGAGGAG CAACTTGTTA TTGATCTCCA TGCCCGTCTT GGCAACAGGT GGTCCAAAAT TGCTGCCAGG
TTACCCGGAA GAACGGACAA CGAGATTAAA AACCATTGGA ACACACATAT CAAGAAAAAA CTCCTGAAAA TGGGTATTGA
TCCCGTTACT CATGAACCTC TCGTTAAACA AGCAGCATCG CAGGATAGTT CACCCTCCCC CTCAGAGCAT TTGCCACAGC
CTGAGAATAA CCTCGATCAG GTGAAGGAAA CTGATGGGGT TCTCAACTCA GAGGAGAATT CAAGTTCATC CCAAGCTGAA
AACTCTTCTG GGGATGATTC ACTTTTGCTA GATAGCATTT GCAGTGACGA TTCTCTGTTA AACACCCTGT GGCTGGATGA
AACTCCTCTG ATGGAAGCAT TATGGGACAC AACACCCAAA CTAGAGAATA ATACTAACAG TAACACGGGT TTGGTACCAT
CTTGGGAGGA CAACTGTGCT TGGTTATTGG ACTGTCAGGA CTTCGGTATT CATGATTTTG GGTTTAACTG TTTCAACGAG
ATAGAGTCAA ATGCACTGCA TACCATAGAA ATGAAGGACG AGAAGCATTA ACTACACGCA TGCAGTAATA GATCTGGTGA
AGGGAATTAA TTGTCTACGA AACAAACAAT CAGGGTAAAA TATCAAATCT ATTAATGTGA CCAAATACCA CGGGCTCAAA
TTTATGTTCT TGGTGTTCAA TTTTATCTAC CTAGTATTTT GCTGAATGTT CTCGGAAGGT GGAAGGTGAA CGTTTCCTCT
TCTGAGGTTC CTCGCCAACC AAATCACAAA ATTGATGGCA AACCAAAACC AAATCATCAA AATGCCACAG TACATACTTA
CATGAGCATT TTCAACTCAG TTGTTTAGAA AAAGAATTAT CAATAAAAAC ATTATTTTAA AATAGATTTT ACAAACACGA
TTTCTTTAAA ATTGAAAAAA GTTTCTTGGT AACTTTTTTC ATCTTTGAGA AAGCCATATT CATGAAATTT GATTAAAATA
TTGTTTTTGT TGTGTAAGAA GTTTTTATTT GAGATATGAT GTATTTATGT GTATGATAGG GACAACACAG AGGGATGTCC
AGTGAGTTGG GAAACATATT GTACAAAGAA GTCTAC

>Vigan.01G386400.01
ATGGGGAGGC AACCCTGCTG TGACAAACTT GGGGTGAAGA AAGGTCCATG GACTGCAGAG GAAGACAAGA AGCTCATCAA
CTTCATTCTC ACCAATGGCC AGTGTTGTTG GCGTGCTGTG CCAAAGCTTG CTGGCCTTAG GCGTTGTGGC AAGAGTTGTC
GCCTTCGTTG GACTAATTAT CTTCGCCCAG ACTTGAAGAG AGGACTCCTC ACACAAGCAG AGGAGCAACT TGTTATTGAT
CTCCATGCCC GTCTTGGCAA CAGGTGGTCC AAAATTGCTG CCAGGTTACC CGGAAGAACG GACAACGAGA TTAAAAACCA
TTGGAACACA CATATCAAGA AAAAACTCCT GAAAATGGGT ATTGATCCCG TTACTCATGA ACCTCTCGTT AAACAAGCAG
CATCGCAGGA TAGTTCACCC TCCCCCTCAG AGCATTTGCC ACAGCCTGAG AATAACCTCG ATCAGGTGAA GGAAACTGAT
GGGGTTCTCA ACTCAGAGGA GAATTCAAGT TCATCCCAAG CTGAAAACTC TTCTGGGGAT GATTCACTTT TGCTAGATAG
CATTTGCAGT GACGATTCTC TGTTAAACAC CCTGTGGCTG GATGAAACTC CTCTGATGGA AGCATTATGG GACACAACAC
CCAAACTAGA GAATAATACT AACAGTAACA CGGGTTTGGT ACCATCTTGG GAGGACAACT GTGCTTGGTT ATTGGACTGT
CAGGACTTCG GTATTCATGA TTTTGGGTTT AACTGTTTCA ACGAGATAGA GTCAAATGCA CTGCATACCA TAGAAATGAA
GGACGAGAAG CATTAA

>Vigan.01G386400.01
MGRQPCCDKL GVKKGPWTAE EDKKLINFIL TNGQCCWRAV PKLAGLRRCG KSCRLRWTNY LRPDLKRGLL TQAEEQLVID
LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLLKMG IDPVTHEPLV KQAASQDSSP SPSEHLPQPE NNLDQVKETD
GVLNSEENSS SSQAENSSGD DSLLLDSICS DDSLLNTLWL DETPLMEALW DTTPKLENNT NSNTGLVPSW EDNCAWLLDC
QDFGIHDFGF NCFNEIESNA LHTIEMKDEK H*