GBrowse Details

Vigan.01G390500.01

Basic Information:
Name: Vigan.01G390500.01
Multiple alignment
Variant Information
Position: Chr01:53028986..53034950 (- strand)
Length: 5965
Functional Information:
Description: Similar to Uncharacterized protein. [I1MUQ1, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: cofactor binding (GO:0048037)
InterPro: UBA/THIF-type NAD/FAD binding fold (IPR000594)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (IPR006140)
Molybdenum cofactor biosynthesis, MoeB (IPR009036)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.09,4.63,21.98,14.61,33.64,30.21,20.70,21.10
Arabidopsis thaliana homolog: AT1G05350.1
Automatic updates:
Name: BT097036 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-25P12 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53028986..53029117 (- strand)
Length: 132
Type: three_prime_UTR
Position: Chr01:53029118..53029254 (- strand)
Length: 137
Type: CDS
Position: Chr01:53030480..53030526 (- strand)
Length: 47
Type: CDS
Position: Chr01:53030730..53030845 (- strand)
Length: 116
Type: CDS
Position: Chr01:53030967..53031053 (- strand)
Length: 87
Type: CDS
Position: Chr01:53031262..53031336 (- strand)
Length: 75
Type: CDS
Position: Chr01:53031551..53031625 (- strand)
Length: 75
Type: CDS
Position: Chr01:53031908..53031990 (- strand)
Length: 83
Type: CDS
Position: Chr01:53032391..53032427 (- strand)
Length: 37
Type: CDS
Position: Chr01:53032526..53032678 (- strand)
Length: 153
Type: CDS
Position: Chr01:53032826..53032894 (- strand)
Length: 69
Type: CDS
Position: Chr01:53033179..53033307 (- strand)
Length: 129
Type: CDS
Position: Chr01:53034132..53034245 (- strand)
Length: 114
Type: CDS
Position: Chr01:53034356..53034424 (- strand)
Length: 69
Type: CDS
Position: Chr01:53034566..53034655 (- strand)
Length: 90
Type: CDS
Position: Chr01:53034656..53034950 (- strand)
Length: 295
Type: five_prime_UTR


>Vigan.01G390500.01
TCTTAATCAG GACAAAAAAA TTGTTAATAC ACTAACCAAA GCAAGTAGCG GCAGCACCAG GGAGAGTTGA AGTTAGAGCC
TATGCTGGTG ATCCTAGTGG ACTGATAGGC TTAGATACAA TAACAGGGAG CCAGGCCACC TCTCTCTGAC TACAGCGCCA
ACCATCAATA CATTGCTCTA AAACTTCAAA CTCAGGGTTT CTGGATATTC CAAATTTCCA ACTATCCACA GAAACCCGCG
ATCCGCACAA AACAGAATAC AGGCGTTTGA AAAACGCTGT TGATTCCAGA GCGAGATGGA GGTCGAACTC AAACAGTTGA
ACGCCGATCT TCAATTTCTG AGTCAATCGC TTCCCGATCC ATCTCACCAT GCTTTGCTCG ACAAGATTCA ATTGCGTGTT
GAGGAACTTG GCAAGCTTGC AGCGGCTGCA CCTGTTCGAC GCTCCAAAGT CGAGGATATG AGTGCTGAGG TTGTAGATAG
CAATCCTTAT AGTCGGCTTA TGGCACTTCA GAGAATGGGT ATTGTGGAGA ACTATGAAAG AATACGCGAT TTCTCCGTTG
CCATAGTTGG GATAGGTGGT GTAGGAAGTG TTGCAGCTGA GATGCTGACT AGATGCGGCA TAGGTCGACT TTTGTTGTAT
GATTATGACA AAGTGGAGCT TGCAAACATG AATAGGTTGT TCTTTCGTCC AGATCAGGTT GGTTTGACTA AGACAGATGC
AGCTGTACAG ACTCTTTCAG ACATAAACCC TGATGTTGTA CTAGAGAGCT ATACACTGAA TATCACAACC GTCACAGGTT
TTGAAACCTT TATGTCAAGT TTGAAAAAAA AATCATTTTG CCCAAATAAA GAAGGGAGTG GCGTGGATCT GGTTTTAAGT
TGTGTGGATA ATTACGAAGC AAGAATGGCT GTTAACCAGG CCTGTAATGA ATTGAGTCAA ACATGGATGG AGTCAGGTGT
TTCTGAGGAT GCTGTTTCTG GCCATATTCA ATTACTTATT CCTGGTGAAA CTGCCTGTTT TGCTTGTGCC CCTCCTCTGG
TTGTTGCATC TGGGGTAGAT GAACGCACAC TCAAGCGTGA AGGGGTCTGT GCTGCCTCTT TACCCACCAC TATGGGGGTT
GTTGCTGGCC TTCTAGTCCA AAACACACTA AAATTATTGT TAGGCTTTGG ACAAGTCTCT CCATATTTGG GATATAATTC
TCTAAAGGAT TTTTTTCCAA CTATGCAAAT GAAGCCAAAC CCTCAATGTT CAAATGTTGC TTGCTTGAAA AGACAGGAAG
AATACATGCT TGCAAAACCA GCAAGAGATG CTGCAGCCAA AGCAAAAATG GAAGCTGAAG TACTATCAAC TGAGGAAGTG
CCACTTCACG ACGATAATGA ATGGAATATA AGTGTTGTTG ATGATGTTGA GCTGGATGGT CCGGATACCA GAAGTTCAGA
TGTTCTGCCG GAAGGTCTCA CACATGAACT TCCTAGTGCA GACGAGTTTC ATGAGGCAAC TCCTGACGCT CCAGTAGCTG
ACAATGACGA CCTTGAAGAT CTTCGTAGGC AACTTGAAGC CATTAATTCT GCATAGTATA GTGTCAAAAT ATTTTTGCCT
TTTTTAAAGG AAAAAATTTC TGAATTTAAT TGTTCAATTG AGCCAGATTA ACTTTGAAAA TTGAGAAAAA CTAATGTTAA
ATTATTGACT ATTTTGACAA TCCATCCT

>Vigan.01G390500.01
ATGGAGGTCG AACTCAAACA GTTGAACGCC GATCTTCAAT TTCTGAGTCA ATCGCTTCCC GATCCATCTC ACCATGCTTT
GCTCGACAAG ATTCAATTGC GTGTTGAGGA ACTTGGCAAG CTTGCAGCGG CTGCACCTGT TCGACGCTCC AAAGTCGAGG
ATATGAGTGC TGAGGTTGTA GATAGCAATC CTTATAGTCG GCTTATGGCA CTTCAGAGAA TGGGTATTGT GGAGAACTAT
GAAAGAATAC GCGATTTCTC CGTTGCCATA GTTGGGATAG GTGGTGTAGG AAGTGTTGCA GCTGAGATGC TGACTAGATG
CGGCATAGGT CGACTTTTGT TGTATGATTA TGACAAAGTG GAGCTTGCAA ACATGAATAG GTTGTTCTTT CGTCCAGATC
AGGTTGGTTT GACTAAGACA GATGCAGCTG TACAGACTCT TTCAGACATA AACCCTGATG TTGTACTAGA GAGCTATACA
CTGAATATCA CAACCGTCAC AGGTTTTGAA ACCTTTATGT CAAGTTTGAA AAAAAAATCA TTTTGCCCAA ATAAAGAAGG
GAGTGGCGTG GATCTGGTTT TAAGTTGTGT GGATAATTAC GAAGCAAGAA TGGCTGTTAA CCAGGCCTGT AATGAATTGA
GTCAAACATG GATGGAGTCA GGTGTTTCTG AGGATGCTGT TTCTGGCCAT ATTCAATTAC TTATTCCTGG TGAAACTGCC
TGTTTTGCTT GTGCCCCTCC TCTGGTTGTT GCATCTGGGG TAGATGAACG CACACTCAAG CGTGAAGGGG TCTGTGCTGC
CTCTTTACCC ACCACTATGG GGGTTGTTGC TGGCCTTCTA GTCCAAAACA CACTAAAATT ATTGTTAGGC TTTGGACAAG
TCTCTCCATA TTTGGGATAT AATTCTCTAA AGGATTTTTT TCCAACTATG CAAATGAAGC CAAACCCTCA ATGTTCAAAT
GTTGCTTGCT TGAAAAGACA GGAAGAATAC ATGCTTGCAA AACCAGCAAG AGATGCTGCA GCCAAAGCAA AAATGGAAGC
TGAAGTACTA TCAACTGAGG AAGTGCCACT TCACGACGAT AATGAATGGA ATATAAGTGT TGTTGATGAT GTTGAGCTGG
ATGGTCCGGA TACCAGAAGT TCAGATGTTC TGCCGGAAGG TCTCACACAT GAACTTCCTA GTGCAGACGA GTTTCATGAG
GCAACTCCTG ACGCTCCAGT AGCTGACAAT GACGACCTTG AAGATCTTCG TAGGCAACTT GAAGCCATTA ATTCTGCATA
G

>Vigan.01G390500.01
MEVELKQLNA DLQFLSQSLP DPSHHALLDK IQLRVEELGK LAAAAPVRRS KVEDMSAEVV DSNPYSRLMA LQRMGIVENY
ERIRDFSVAI VGIGGVGSVA AEMLTRCGIG RLLLYDYDKV ELANMNRLFF RPDQVGLTKT DAAVQTLSDI NPDVVLESYT
LNITTVTGFE TFMSSLKKKS FCPNKEGSGV DLVLSCVDNY EARMAVNQAC NELSQTWMES GVSEDAVSGH IQLLIPGETA
CFACAPPLVV ASGVDERTLK REGVCAASLP TTMGVVAGLL VQNTLKLLLG FGQVSPYLGY NSLKDFFPTM QMKPNPQCSN
VACLKRQEEY MLAKPARDAA AKAKMEAEVL STEEVPLHDD NEWNISVVDD VELDGPDTRS SDVLPEGLTH ELPSADEFHE
ATPDAPVADN DDLEDLRRQL EAINSA*