GBrowse Details

Vigan.01G391400.01

Basic Information:
Name: Vigan.01G391400.01
Multiple alignment
Variant Information
Position: Chr01:53103548..53107916 (- strand)
Length: 4369
Functional Information:
Description: Similar to DNA binding protein, putative. [B9RAH0, Ricinus communis]
GO: Molecular Function: nucleic acid binding (GO:0003676)
InterPro: SAP domain (IPR003034)
Ubiquitin ligase, Det1/DDB1-complexing (IPR018276)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.28,31.06,6.56,8.11,11.37,12.36,8.74,7.95
Arabidopsis thaliana homolog: AT5G63460.4
Automatic updates:
Name: NM_001248054 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306690 (LOC100306690), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr01:53103548..53104262 (- strand)
Length: 715
Type: three_prime_UTR
Position: Chr01:53104263..53104501 (- strand)
Length: 239
Type: CDS
Position: Chr01:53105765..53105832 (- strand)
Length: 68
Type: CDS
Position: Chr01:53106033..53106144 (- strand)
Length: 112
Type: CDS
Position: Chr01:53106709..53106754 (- strand)
Length: 46
Type: CDS
Position: Chr01:53107684..53107788 (- strand)
Length: 105
Type: CDS
Position: Chr01:53107789..53107916 (- strand)
Length: 128
Type: five_prime_UTR


>Vigan.01G391400.01
GAGAAAGTTA CGGTATGTTT GGTGTCGTGG CTTAAGTTTT ATAGTGTGTT AGTGTGACAC TGCGAAGAGC ACACGAGAGG
CCAAGTCCTC TCCTTTTCAC TGCGGTTGCG AAACCTCACT TCCATTCCAT GGTAATGGAT GCACCCAATC CTTCTTCCTC
CGCCGCCTCC TCCTTCCTCG CCAATCTCCC CTCTCGAGGC CACTTCTCTT CCACCGTCGT TTCGTCCAAT CCGGGGGGGA
TGCGGGCCTA TATATGCGAT CATGATACAT CGCCACCAGA AGGTCAACAT ATTAAGACAA ACCAACAAAA CATACTGATT
AGATCACTCA CCCTCAAGAA ACAAAGGGGC GATTCCAGCT CAAAGGATGG ATCTGATGGT TCCAGAAAGA GGAATGCTGA
AAAGGTTTTG GAAAGATCTT CAGCCAAGAA AACAAATAAT CAAATAAATT CCCGACAAGA GGGATCAAAC AGTCAAACAG
CCACTAGGGA CTTGCACAAC CTGACGGTAG AGAGACTTCG TGCTCTTTTG AAAGCTAAAG GTCTTTCAAC CAAGGGAAAG
AAGGCAAGTT TCCAGTCTTC CTACAGTTTT AACATACATG CATTTGGAAG ATATCGCTCA TTAATTTGCT TGATAGTATT
TTGTTTACTC CATACGTCAC AGTGTAGTGG TTGTCAACTG GTATATTATT GTCCATGATT GATTGTTGTC AAGGTGCTCG
CTTACCTTCT CTCCTTACCT AATAAACGAA ATAAAATCTA CAGGAGGAGC TTATTACTCG TCTAAAAGAC GCAACTGGTT
AAAGCATAGC GTGGTGGTAG GAATACCCTG TTCATTAAGC ATCCAATGTA AGAGTAGTTA GTGTTTAATG TAACTTAGGA
TCTGGAACTA ATATATATAT ATATATATAT ATACATACCC AGTGCAAATT ACAGTTACAG ATGAATATTA TCGTTTTGGA
GCTATTACCG TTTCGCGACT ATCAAGTATG TTTCTTGGGG CATGATTTGT AGGGGTCAAC TACAGAATTG GACAGTCAAT
GGTGGTTTTC AAGTTTTAAT TACGATCTGC GGTTGCATCC TTGTCTTTTG CATATCAACT CTTGTTAAGT TAGACATGTA
ACGGTTACCA ATAACATGTG GAATATCTTG TATTGTTAAC CATTGCATTG AGATTTTTTA AATAATCAAG TAGTCAATTC
CAACATCTAT TTGGCTTTTA CCTTTTCAAC GCATTCACCC TTTCAAACCG TTGAGCTGCG GCCGACAGTG CTGGAAATAG
ACTCATGCAG GGCTTTCACG GTTCCGTTCG ATGGACACAA GCATAATATC ACCACCATAT GAGATGACCA CTATCCTTTT
CATTTTATAC TCTTACGTTT AGATAATATT ATTATCACAT TTATCATATT TTG

>Vigan.01G391400.01
ATGGTAATGG ATGCACCCAA TCCTTCTTCC TCCGCCGCCT CCTCCTTCCT CGCCAATCTC CCCTCTCGAG GCCACTTCTC
TTCCACCGTC GTTTCGTCCA ATCCGGGGGG GATGCGGGCC TATATATGCG ATCATGATAC ATCGCCACCA GAAGGTCAAC
ATATTAAGAC AAACCAACAA AACATACTGA TTAGATCACT CACCCTCAAG AAACAAAGGG GCGATTCCAG CTCAAAGGAT
GGATCTGATG GTTCCAGAAA GAGGAATGCT GAAAAGGTTT TGGAAAGATC TTCAGCCAAG AAAACAAATA ATCAAATAAA
TTCCCGACAA GAGGGATCAA ACAGTCAAAC AGCCACTAGG GACTTGCACA ACCTGACGGT AGAGAGACTT CGTGCTCTTT
TGAAAGCTAA AGGTCTTTCA ACCAAGGGAA AGAAGGCAAG TTTCCAGTCT TCCTACAGTT TTAACATACA TGCATTTGGA
AGATATCGCT CATTAATTTG CTTGATAGTA TTTTGTTTAC TCCATACGTC ACAGTGTAGT GGTTGTCAAC TGGTATATTA
TTGTCCATGA 

>Vigan.01G391400.01
MVMDAPNPSS SAASSFLANL PSRGHFSSTV VSSNPGGMRA YICDHDTSPP EGQHIKTNQQ NILIRSLTLK KQRGDSSSKD
GSDGSRKRNA EKVLERSSAK KTNNQINSRQ EGSNSQTATR DLHNLTVERL RALLKAKGLS TKGKKASFQS SYSFNIHAFG
RYRSLICLIV FCLLHTSQCS GCQLVYYCP*